miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30632 5' -65.5 NC_006549.1 + 7691 0.66 0.467772
Target:  5'- --aUCAGGGGGGCUUUUGGaCCCgaCGGa -3'
miRNA:   3'- aaaGGUCCCCCCGGGAGUCcGGG--GCC- -5'
30632 5' -65.5 NC_006549.1 + 50506 0.66 0.432972
Target:  5'- -gUCCAGGuGGaccagccgGGCCaUCuGGCCCCGcGg -3'
miRNA:   3'- aaAGGUCC-CC--------CCGGgAGuCCGGGGC-C- -5'
30632 5' -65.5 NC_006549.1 + 50904 0.66 0.432972
Target:  5'- --cCCAGGcguuccuguGGGUCCUCugGGGCCuuGGg -3'
miRNA:   3'- aaaGGUCCc--------CCCGGGAG--UCCGGggCC- -5'
30632 5' -65.5 NC_006549.1 + 100282 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 100157 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 100094 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 100031 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 99968 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 99905 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 99842 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 99779 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 99716 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 99653 0.67 0.407885
Target:  5'- -cUCUGGcucGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc--CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 7537 0.67 0.383727
Target:  5'- aUUCUAGcccGGuGGGCCCUCagGGGCCagaGGg -3'
miRNA:   3'- aAAGGUC---CC-CCCGGGAG--UCCGGgg-CC- -5'
30632 5' -65.5 NC_006549.1 + 100219 0.67 0.375889
Target:  5'- -cUCUGGcuGGGGaCCUCGGGCUUCGGg -3'
miRNA:   3'- aaAGGUCc-CCCCgGGAGUCCGGGGCC- -5'
30632 5' -65.5 NC_006549.1 + 50253 0.68 0.359028
Target:  5'- uUUUCCAGGcGGGCCagcgucucccaCGGGCCCUuGGa -3'
miRNA:   3'- -AAAGGUCCcCCCGGga---------GUCCGGGG-CC- -5'
30632 5' -65.5 NC_006549.1 + 40989 0.68 0.331171
Target:  5'- -aUCCcuGGGGGCCC-CcGGUCCCa- -3'
miRNA:   3'- aaAGGucCCCCCGGGaGuCCGGGGcc -5'
30632 5' -65.5 NC_006549.1 + 7117 0.69 0.310324
Target:  5'- gUUCCGccGGGcccauGGGCCCagUCGGGCUCCaGGg -3'
miRNA:   3'- aAAGGU--CCC-----CCCGGG--AGUCCGGGG-CC- -5'
30632 5' -65.5 NC_006549.1 + 102600 0.71 0.226264
Target:  5'- -cUCCGGGGugcccGGGaggacCUCUCGGGCCCCuGGg -3'
miRNA:   3'- aaAGGUCCC-----CCC-----GGGAGUCCGGGG-CC- -5'
30632 5' -65.5 NC_006549.1 + 7382 0.71 0.206073
Target:  5'- --cCCAGGGcccgcccGGCCCUCcaGGGCCCCa- -3'
miRNA:   3'- aaaGGUCCCc------CCGGGAG--UCCGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.