miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30683 5' -54.9 NC_006552.1 + 51367 0.66 0.800144
Target:  5'- aGGUGC-CGGCGcgcaCGUUCAucAgGCGCCg -3'
miRNA:   3'- aCCGCGaGUUGUa---GCAGGU--UgCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 7867 0.66 0.800144
Target:  5'- cUGGCGCagcUCGACAUCuUCCA-CGacaccaaggaGCCc -3'
miRNA:   3'- -ACCGCG---AGUUGUAGcAGGUuGCg---------CGG- -5'
30683 5' -54.9 NC_006552.1 + 53673 0.66 0.800144
Target:  5'- aGGCGCUUGcGCuuuUCGugcgcgcucUCCAGCGC-CCa -3'
miRNA:   3'- aCCGCGAGU-UGu--AGC---------AGGUUGCGcGG- -5'
30683 5' -54.9 NC_006552.1 + 33330 0.66 0.786646
Target:  5'- gGGCGCUCGccgaaguaaGCcgugaaagcggcuUCGgCCAGCGCGgCg -3'
miRNA:   3'- aCCGCGAGU---------UGu------------AGCaGGUUGCGCgG- -5'
30683 5' -54.9 NC_006552.1 + 11606 0.66 0.780765
Target:  5'- gUGGCGC-CGGCca-GUUCggUGcCGCCg -3'
miRNA:   3'- -ACCGCGaGUUGuagCAGGuuGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 50066 0.66 0.780765
Target:  5'- cUGGCGCgCGuugaacuCGUCG-CCGcgcaaGCGCGCUu -3'
miRNA:   3'- -ACCGCGaGUu------GUAGCaGGU-----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 64325 0.66 0.779779
Target:  5'- -uGCGCUgccuuucCGGCuAUCGUCCGcccaGCGCCc -3'
miRNA:   3'- acCGCGA-------GUUG-UAGCAGGUug--CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 6415 0.66 0.770844
Target:  5'- aGGCaacUUCAAa--CGUCCAGCagGCGCCg -3'
miRNA:   3'- aCCGc--GAGUUguaGCAGGUUG--CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 62495 0.66 0.770844
Target:  5'- gUGGCGCauggacgcuucuUCAGCGcagcUUGgcgCCAucGCGCGCUu -3'
miRNA:   3'- -ACCGCG------------AGUUGU----AGCa--GGU--UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 42916 0.66 0.764824
Target:  5'- cGGuCGCUCGccGCAUCGcugaugguugccugaUCCAccaGCagguGCGCCg -3'
miRNA:   3'- aCC-GCGAGU--UGUAGC---------------AGGU---UG----CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 26613 0.66 0.760783
Target:  5'- -cGCGCUUcACAUCGa--AGCGCGCa -3'
miRNA:   3'- acCGCGAGuUGUAGCaggUUGCGCGg -5'
30683 5' -54.9 NC_006552.1 + 31652 0.66 0.760783
Target:  5'- aGGCGCgCAGCGg---CCGACagcagcaggccaGCGCCg -3'
miRNA:   3'- aCCGCGaGUUGUagcaGGUUG------------CGCGG- -5'
30683 5' -54.9 NC_006552.1 + 19349 0.66 0.760783
Target:  5'- gGGCGUagaaaUCAccuGCGggCGUCUgaaccaGGCGCGCCc -3'
miRNA:   3'- aCCGCG-----AGU---UGUa-GCAGG------UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 54467 0.66 0.760783
Target:  5'- cGGC-CUCGGCGuuuUCGcCCAuggcgAUGCGCUg -3'
miRNA:   3'- aCCGcGAGUUGU---AGCaGGU-----UGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 52825 0.66 0.760783
Target:  5'- cGGCGCgcuUCuGCAaCGgCCuGCGCGUCg -3'
miRNA:   3'- aCCGCG---AGuUGUaGCaGGuUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 15480 0.66 0.757739
Target:  5'- cGGUGCUgAugAUCGaggaaggcauuacggCGAUGCGCCg -3'
miRNA:   3'- aCCGCGAgUugUAGCag-------------GUUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 46431 0.67 0.750593
Target:  5'- aUGGCcuguuGCUgCcguGCcgCGUCCgAACGUGCCu -3'
miRNA:   3'- -ACCG-----CGA-Gu--UGuaGCAGG-UUGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 62066 0.67 0.750593
Target:  5'- -aGCGCUCcGCuUCGUaagCGGCGaCGCCu -3'
miRNA:   3'- acCGCGAGuUGuAGCAg--GUUGC-GCGG- -5'
30683 5' -54.9 NC_006552.1 + 39030 0.67 0.750593
Target:  5'- uUGGCGCgcgcgaUCAGCAgaCG-CC--CGCGCCa -3'
miRNA:   3'- -ACCGCG------AGUUGUa-GCaGGuuGCGCGG- -5'
30683 5' -54.9 NC_006552.1 + 13055 0.67 0.750593
Target:  5'- gUGGCGCgcccGCGUCGUUgAuaaaacCGCGCUc -3'
miRNA:   3'- -ACCGCGagu-UGUAGCAGgUu-----GCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.