miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30687 5' -54.7 NC_006552.1 + 52966 0.66 0.773904
Target:  5'- -cGGGCGGcCAUCCGCgCACGgC-GCUCg -3'
miRNA:   3'- aaCCUGUU-GUAGGUG-GUGUgGuCGGG- -5'
30687 5' -54.7 NC_006552.1 + 29617 0.66 0.773904
Target:  5'- -cGGACGGga--CGCCAC-CCAGUCCc -3'
miRNA:   3'- aaCCUGUUguagGUGGUGuGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 8713 0.66 0.773904
Target:  5'- -aGGGCGGCGUCCaguGCCuguuCACCGaguacugacgauGCCUc -3'
miRNA:   3'- aaCCUGUUGUAGG---UGGu---GUGGU------------CGGG- -5'
30687 5' -54.7 NC_006552.1 + 14564 0.66 0.763725
Target:  5'- -aGGACAugACGUCCAUCAa--CGGCUUg -3'
miRNA:   3'- aaCCUGU--UGUAGGUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 24184 0.66 0.763725
Target:  5'- gUGGGCGAacagcaguuCAUCCGCguugGCugCGGCCg -3'
miRNA:   3'- aACCUGUU---------GUAGGUGg---UGugGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 53932 0.66 0.763725
Target:  5'- -cGGAUcGCGUCgGCCAauaUGGCCCa -3'
miRNA:   3'- aaCCUGuUGUAGgUGGUgugGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 27154 0.66 0.763725
Target:  5'- -cGGAUGGCcUCCACCACGUCGcGCUUg -3'
miRNA:   3'- aaCCUGUUGuAGGUGGUGUGGU-CGGG- -5'
30687 5' -54.7 NC_006552.1 + 10242 0.66 0.75755
Target:  5'- cUGGACGACGcugguaaggauUCCgacgaguucgcacagGCCgACGCCAGCUUc -3'
miRNA:   3'- aACCUGUUGU-----------AGG---------------UGG-UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 1239 0.66 0.754446
Target:  5'- -cGGACAGCAaucugguggcgcgcgCCACCAacUACCuGGCCg -3'
miRNA:   3'- aaCCUGUUGUa--------------GGUGGU--GUGG-UCGGg -5'
30687 5' -54.7 NC_006552.1 + 32422 0.66 0.753408
Target:  5'- -cGGGCAcgcuacGCAcCUGCCcuugggugaACAUCAGCCCg -3'
miRNA:   3'- aaCCUGU------UGUaGGUGG---------UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 23735 0.66 0.753408
Target:  5'- cUUGGuagcugacCGACAUUC-CCauGCAUCAGCCCu -3'
miRNA:   3'- -AACCu-------GUUGUAGGuGG--UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 53366 0.66 0.753408
Target:  5'- -cGGACAGaagauUCUGCUugGcCCAGUCCg -3'
miRNA:   3'- aaCCUGUUgu---AGGUGGugU-GGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 65188 0.66 0.753408
Target:  5'- -gGGGCAGCcugcUCCaACCGaucaagauaAUCAGCCCa -3'
miRNA:   3'- aaCCUGUUGu---AGG-UGGUg--------UGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 11180 0.66 0.747158
Target:  5'- cUGGccGCgAGCcgCCACCGCggccgaccacucaccACCAGCCg -3'
miRNA:   3'- aACC--UG-UUGuaGGUGGUG---------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 557 0.66 0.742967
Target:  5'- -cGGcCGACgcuGUUCGCCGCGCC-GCCg -3'
miRNA:   3'- aaCCuGUUG---UAGGUGGUGUGGuCGGg -5'
30687 5' -54.7 NC_006552.1 + 3511 0.66 0.742967
Target:  5'- -cGGACcuGGCcgCUcgACCACGCCGGCauCCu -3'
miRNA:   3'- aaCCUG--UUGuaGG--UGGUGUGGUCG--GG- -5'
30687 5' -54.7 NC_006552.1 + 522 0.66 0.742967
Target:  5'- -cGcGACAGagUAUgUGCCgaGCACCGGCCCa -3'
miRNA:   3'- aaC-CUGUU--GUAgGUGG--UGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 34608 0.66 0.742967
Target:  5'- aUUGGuaGCAGCGUCgCACUAUcaucgguacucgGCCAGCUa -3'
miRNA:   3'- -AACC--UGUUGUAG-GUGGUG------------UGGUCGGg -5'
30687 5' -54.7 NC_006552.1 + 13736 0.66 0.742967
Target:  5'- -aGGAauuGACcacaCugCGCACCAGCCUg -3'
miRNA:   3'- aaCCUg--UUGuag-GugGUGUGGUCGGG- -5'
30687 5' -54.7 NC_006552.1 + 49664 0.66 0.732413
Target:  5'- cUGGAUGuCGUCCugCACGCCgauuggcgucggGGCUUg -3'
miRNA:   3'- aACCUGUuGUAGGugGUGUGG------------UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.