Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30690 | 3' | -60 | NC_006552.1 | + | 43609 | 0.72 | 0.226253 |
Target: 5'- aUAGGCGCUaugcGGAUGcaccAGcGCGCCCuGGCCg -3' miRNA: 3'- -GUCCGCGA----CCUGU----UCuCGCGGG-UCGG- -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 61624 | 0.71 | 0.250211 |
Target: 5'- cCAGGUGCUGGcCGAGccgccGGCG-CCGGCa -3' miRNA: 3'- -GUCCGCGACCuGUUC-----UCGCgGGUCGg -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 32696 | 0.71 | 0.25652 |
Target: 5'- --cGCGCgUGGACGgcaucacgGGAGCGCgCCaAGCCg -3' miRNA: 3'- gucCGCG-ACCUGU--------UCUCGCG-GG-UCGG- -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 32487 | 0.69 | 0.311723 |
Target: 5'- -cGGCGCgGGGCcgguGGAGCGCUCgaacaGGUCg -3' miRNA: 3'- guCCGCGaCCUGu---UCUCGCGGG-----UCGG- -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 31776 | 0.69 | 0.318469 |
Target: 5'- gAGGCGCucgccgUGGACGaucaccuGGAGCuuGCCC-GCCu -3' miRNA: 3'- gUCCGCG------ACCUGU-------UCUCG--CGGGuCGG- -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 2128 | 0.68 | 0.367059 |
Target: 5'- cCAGGUGCUGGGCAuGGccaaCGCCgucGCCg -3' miRNA: 3'- -GUCCGCGACCUGUuCUc---GCGGgu-CGG- -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 50891 | 0.68 | 0.367059 |
Target: 5'- -cGGCGC-GGGCcuGGGC-CUCGGCCu -3' miRNA: 3'- guCCGCGaCCUGuuCUCGcGGGUCGG- -5' |
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30690 | 3' | -60 | NC_006552.1 | + | 45456 | 0.66 | 0.516382 |
Target: 5'- -uGGCGCUGGcCGcu-GCGCgCCAGgCu -3' miRNA: 3'- guCCGCGACCuGUucuCGCG-GGUCgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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