Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30694 | 3' | -60.8 | NC_006552.1 | + | 53549 | 0.66 | 0.443006 |
Target: 5'- --cGCCGucGCccuGCCAGaGGcCCAGCUUCa -3' miRNA: 3'- guuCGGCcuCG---UGGUC-CC-GGUCGAGG- -5' |
|||||||
30694 | 3' | -60.8 | NC_006552.1 | + | 62185 | 0.66 | 0.433689 |
Target: 5'- gGAGCgcgCGGAGCagaucgugcuccACCAGGGCgAGC-Cg -3' miRNA: 3'- gUUCG---GCCUCG------------UGGUCCCGgUCGaGg -5' |
|||||||
30694 | 3' | -60.8 | NC_006552.1 | + | 3825 | 0.66 | 0.433689 |
Target: 5'- gGAGCCGGGccauguuuuggcGCGCCGGcGG-CGGCUacaCCa -3' miRNA: 3'- gUUCGGCCU------------CGUGGUC-CCgGUCGA---GG- -5' |
|||||||
30694 | 3' | -60.8 | NC_006552.1 | + | 6846 | 0.66 | 0.424486 |
Target: 5'- --cGCgGGGGCaguuucGCCGuGGCCAGC-CCa -3' miRNA: 3'- guuCGgCCUCG------UGGUcCCGGUCGaGG- -5' |
|||||||
30694 | 3' | -60.8 | NC_006552.1 | + | 23381 | 0.66 | 0.475499 |
Target: 5'- --cGCCGucgcccgcacacucuGGGCAuCCAGGGUgCGGCUCg -3' miRNA: 3'- guuCGGC---------------CUCGU-GGUCCCG-GUCGAGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home