Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30695 | 3' | -62.9 | NC_006552.1 | + | 31931 | 0.66 | 0.401103 |
Target: 5'- gCGCCACCuuGUCgCCgauggcgaggcaguaGGCGGAauUGAUCGCGu -3' miRNA: 3'- -GCGGUGG--CGG-GG---------------UCGCCU--ACUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 15604 | 0.66 | 0.397654 |
Target: 5'- gCGCagcguucaACUGCgCCCAGCaGGccuggGACCGCGa -3' miRNA: 3'- -GCGg-------UGGCG-GGGUCG-CCua---CUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 3538 | 0.66 | 0.395081 |
Target: 5'- gGCCggacguccaaccugGCCGCCgCA-CGGAccUGGCCGCu -3' miRNA: 3'- gCGG--------------UGGCGGgGUcGCCU--ACUGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 25877 | 0.66 | 0.389118 |
Target: 5'- uCGUCGCCGCacuucauguCCCAGUGGAUuucgUCGCGa -3' miRNA: 3'- -GCGGUGGCG---------GGGUCGCCUAcu--GGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 24069 | 0.66 | 0.380703 |
Target: 5'- gCGUCGCgGUCCU-GCGcGAUGauGCCGCAg -3' miRNA: 3'- -GCGGUGgCGGGGuCGC-CUAC--UGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 56050 | 0.66 | 0.380703 |
Target: 5'- uGCCGCCGUcaCCCuGCGcGUaGCCGCu -3' miRNA: 3'- gCGGUGGCG--GGGuCGCcUAcUGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 59888 | 0.66 | 0.380703 |
Target: 5'- aGCUACCGCgCCAGuuGGUGauGCCGa- -3' miRNA: 3'- gCGGUGGCGgGGUCgcCUAC--UGGCgu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 53618 | 0.66 | 0.37241 |
Target: 5'- uGCCACUGCgCCGGCccagGGCCuGCAc -3' miRNA: 3'- gCGGUGGCGgGGUCGccuaCUGG-CGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 1468 | 0.66 | 0.37241 |
Target: 5'- uCGCCgaguACCcguGCCCCgAGCaGGAcaacaUGACCGCc -3' miRNA: 3'- -GCGG----UGG---CGGGG-UCG-CCU-----ACUGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 60409 | 0.66 | 0.371587 |
Target: 5'- gCGCCACCacuacaGCCCCcaccugcGGCGGGggcGAUgCGCAc -3' miRNA: 3'- -GCGGUGG------CGGGG-------UCGCCUa--CUG-GCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 40508 | 0.66 | 0.356196 |
Target: 5'- aCGCCA-CGUCCUucGGCGGAaGcGCCGCu -3' miRNA: 3'- -GCGGUgGCGGGG--UCGCCUaC-UGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 57854 | 0.66 | 0.355399 |
Target: 5'- gCGCCAucugucgugcugcCCGCCCCAGUucc--GCCGCAg -3' miRNA: 3'- -GCGGU-------------GGCGGGGUCGccuacUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 46943 | 0.67 | 0.340486 |
Target: 5'- uCGCCGCCGaCUCCAGCGcuccGGUuGgCGCAc -3' miRNA: 3'- -GCGGUGGC-GGGGUCGC----CUAcUgGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 2842 | 0.67 | 0.338943 |
Target: 5'- gCGCUACUgGCUCCAGCacuccagugGACCGCAa -3' miRNA: 3'- -GCGGUGG-CGGGGUCGccua-----CUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 33941 | 0.67 | 0.325283 |
Target: 5'- uGUCGCCGCCgUuGgGGGUGAUCgGCAg -3' miRNA: 3'- gCGGUGGCGGgGuCgCCUACUGG-CGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 2224 | 0.68 | 0.303436 |
Target: 5'- gGCCGgCGCCguucuucugCCGGCGGAccUGcGCCGCc -3' miRNA: 3'- gCGGUgGCGG---------GGUCGCCU--AC-UGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 63523 | 0.68 | 0.303436 |
Target: 5'- cCGCCGCCGCCagcaCgAGCGugucacacGAUGGCuCGCu -3' miRNA: 3'- -GCGGUGGCGGg---G-UCGC--------CUACUG-GCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 64221 | 0.68 | 0.289508 |
Target: 5'- cCGCUcgauGCUGCCCCcGCGGAUGAUa--- -3' miRNA: 3'- -GCGG----UGGCGGGGuCGCCUACUGgcgu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 6647 | 0.68 | 0.289508 |
Target: 5'- aGCCGCUGCCCacugugacuGCGGcaaACCGCGg -3' miRNA: 3'- gCGGUGGCGGGgu-------CGCCuacUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 61610 | 0.68 | 0.276087 |
Target: 5'- aGCCGCCGgCgCCGGCaGGAcuuGCCGCu -3' miRNA: 3'- gCGGUGGCgG-GGUCG-CCUac-UGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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