miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30695 3' -62.9 NC_006552.1 + 60409 0.66 0.371587
Target:  5'- gCGCCACCacuacaGCCCCcaccugcGGCGGGggcGAUgCGCAc -3'
miRNA:   3'- -GCGGUGG------CGGGG-------UCGCCUa--CUG-GCGU- -5'
30695 3' -62.9 NC_006552.1 + 1468 0.66 0.37241
Target:  5'- uCGCCgaguACCcguGCCCCgAGCaGGAcaacaUGACCGCc -3'
miRNA:   3'- -GCGG----UGG---CGGGG-UCG-CCU-----ACUGGCGu -5'
30695 3' -62.9 NC_006552.1 + 53618 0.66 0.37241
Target:  5'- uGCCACUGCgCCGGCccagGGCCuGCAc -3'
miRNA:   3'- gCGGUGGCGgGGUCGccuaCUGG-CGU- -5'
30695 3' -62.9 NC_006552.1 + 24069 0.66 0.380703
Target:  5'- gCGUCGCgGUCCU-GCGcGAUGauGCCGCAg -3'
miRNA:   3'- -GCGGUGgCGGGGuCGC-CUAC--UGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 56050 0.66 0.380703
Target:  5'- uGCCGCCGUcaCCCuGCGcGUaGCCGCu -3'
miRNA:   3'- gCGGUGGCG--GGGuCGCcUAcUGGCGu -5'
30695 3' -62.9 NC_006552.1 + 59888 0.66 0.380703
Target:  5'- aGCUACCGCgCCAGuuGGUGauGCCGa- -3'
miRNA:   3'- gCGGUGGCGgGGUCgcCUAC--UGGCgu -5'
30695 3' -62.9 NC_006552.1 + 25877 0.66 0.389118
Target:  5'- uCGUCGCCGCacuucauguCCCAGUGGAUuucgUCGCGa -3'
miRNA:   3'- -GCGGUGGCG---------GGGUCGCCUAcu--GGCGU- -5'
30695 3' -62.9 NC_006552.1 + 3538 0.66 0.395081
Target:  5'- gGCCggacguccaaccugGCCGCCgCA-CGGAccUGGCCGCu -3'
miRNA:   3'- gCGG--------------UGGCGGgGUcGCCU--ACUGGCGu -5'
30695 3' -62.9 NC_006552.1 + 15604 0.66 0.397654
Target:  5'- gCGCagcguucaACUGCgCCCAGCaGGccuggGACCGCGa -3'
miRNA:   3'- -GCGg-------UGGCG-GGGUCG-CCua---CUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 31931 0.66 0.401103
Target:  5'- gCGCCACCuuGUCgCCgauggcgaggcaguaGGCGGAauUGAUCGCGu -3'
miRNA:   3'- -GCGGUGG--CGG-GG---------------UCGCCU--ACUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.