miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30695 3' -62.9 NC_006552.1 + 15604 0.66 0.397654
Target:  5'- gCGCagcguucaACUGCgCCCAGCaGGccuggGACCGCGa -3'
miRNA:   3'- -GCGg-------UGGCG-GGGUCG-CCua---CUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 8385 0.73 0.122992
Target:  5'- cCGCUcgAgCGCgCCCGGCGGAUGGuuguCCGCAg -3'
miRNA:   3'- -GCGG--UgGCG-GGGUCGCCUACU----GGCGU- -5'
30695 3' -62.9 NC_006552.1 + 7935 0.7 0.200735
Target:  5'- aCGCCcUCGCCgaCGGCGcacGUGACCGCAu -3'
miRNA:   3'- -GCGGuGGCGGg-GUCGCc--UACUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 6647 0.68 0.289508
Target:  5'- aGCCGCUGCCCacugugacuGCGGcaaACCGCGg -3'
miRNA:   3'- gCGGUGGCGGGgu-------CGCCuacUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 5229 0.77 0.064595
Target:  5'- aCGCa--CGCCCUAGCGGAUGuucACCGCGa -3'
miRNA:   3'- -GCGgugGCGGGGUCGCCUAC---UGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 3627 1.07 0.000317
Target:  5'- uCGCCACCGCCCCAGCGGAUGACCGCAu -3'
miRNA:   3'- -GCGGUGGCGGGGUCGCCUACUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 3538 0.66 0.395081
Target:  5'- gGCCggacguccaaccugGCCGCCgCA-CGGAccUGGCCGCu -3'
miRNA:   3'- gCGG--------------UGGCGGgGUcGCCU--ACUGGCGu -5'
30695 3' -62.9 NC_006552.1 + 2842 0.67 0.338943
Target:  5'- gCGCUACUgGCUCCAGCacuccagugGACCGCAa -3'
miRNA:   3'- -GCGGUGG-CGGGGUCGccua-----CUGGCGU- -5'
30695 3' -62.9 NC_006552.1 + 2224 0.68 0.303436
Target:  5'- gGCCGgCGCCguucuucugCCGGCGGAccUGcGCCGCc -3'
miRNA:   3'- gCGGUgGCGG---------GGUCGCCU--AC-UGGCGu -5'
30695 3' -62.9 NC_006552.1 + 1468 0.66 0.37241
Target:  5'- uCGCCgaguACCcguGCCCCgAGCaGGAcaacaUGACCGCc -3'
miRNA:   3'- -GCGG----UGG---CGGGG-UCG-CCU-----ACUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.