Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30695 | 3' | -62.9 | NC_006552.1 | + | 7935 | 0.7 | 0.200735 |
Target: 5'- aCGCCcUCGCCgaCGGCGcacGUGACCGCAu -3' miRNA: 3'- -GCGGuGGCGGg-GUCGCc--UACUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 33490 | 0.7 | 0.207902 |
Target: 5'- gCGCCACCuGCCCggacuucuuuuccaGGCGGAUGGCaGUAc -3' miRNA: 3'- -GCGGUGG-CGGGg-------------UCGCCUACUGgCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 56733 | 0.7 | 0.216363 |
Target: 5'- uGCC-CUGCUUCAGCaGGAUGuCCGCc -3' miRNA: 3'- gCGGuGGCGGGGUCG-CCUACuGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 38228 | 0.68 | 0.262535 |
Target: 5'- gCGUUGCCGUCagGGCGGAuguaguggacaccUGGCCGCAc -3' miRNA: 3'- -GCGGUGGCGGggUCGCCU-------------ACUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 39778 | 0.68 | 0.276087 |
Target: 5'- uGCUGCCGUCCCAGCGaacagGGCCa-- -3' miRNA: 3'- gCGGUGGCGGGGUCGCcua--CUGGcgu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 61610 | 0.68 | 0.276087 |
Target: 5'- aGCCGCCGgCgCCGGCaGGAcuuGCCGCu -3' miRNA: 3'- gCGGUGGCgG-GGUCG-CCUac-UGGCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 6647 | 0.68 | 0.289508 |
Target: 5'- aGCCGCUGCCCacugugacuGCGGcaaACCGCGg -3' miRNA: 3'- gCGGUGGCGGGgu-------CGCCuacUGGCGU- -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 64221 | 0.68 | 0.289508 |
Target: 5'- cCGCUcgauGCUGCCCCcGCGGAUGAUa--- -3' miRNA: 3'- -GCGG----UGGCGGGGuCGCCUACUGgcgu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 63523 | 0.68 | 0.303436 |
Target: 5'- cCGCCGCCGCCagcaCgAGCGugucacacGAUGGCuCGCu -3' miRNA: 3'- -GCGGUGGCGGg---G-UCGC--------CUACUG-GCGu -5' |
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30695 | 3' | -62.9 | NC_006552.1 | + | 31931 | 0.66 | 0.401103 |
Target: 5'- gCGCCACCuuGUCgCCgauggcgaggcaguaGGCGGAauUGAUCGCGu -3' miRNA: 3'- -GCGGUGG--CGG-GG---------------UCGCCU--ACUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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