miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30698 5' -62.1 NC_006552.1 + 52195 0.66 0.421628
Target:  5'- aGCUGCucGgGCCGuaGCUgCgGCCCaGCGCa -3'
miRNA:   3'- aUGACG--UgCGGCcgUGA-G-CGGG-CGCG- -5'
30698 5' -62.1 NC_006552.1 + 61502 0.66 0.421628
Target:  5'- -cCUGCuuCGuuCCGGCAgUUGCUCGCuGCg -3'
miRNA:   3'- auGACGu-GC--GGCCGUgAGCGGGCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 6153 0.66 0.421628
Target:  5'- aGCUGuCACccgaacacgagGCUGGCGCUCuGCgCGuCGCu -3'
miRNA:   3'- aUGAC-GUG-----------CGGCCGUGAG-CGgGC-GCG- -5'
30698 5' -62.1 NC_006552.1 + 24599 0.66 0.420727
Target:  5'- ---cGCugGuCCGggucgauggugauGCGCUCGCCCaugucGCGCa -3'
miRNA:   3'- augaCGugC-GGC-------------CGUGAGCGGG-----CGCG- -5'
30698 5' -62.1 NC_006552.1 + 65123 0.66 0.412667
Target:  5'- aACgUGCGCGgcaUGGUugUaugcCGCCCGCGUc -3'
miRNA:   3'- aUG-ACGUGCg--GCCGugA----GCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 39401 0.66 0.412667
Target:  5'- gUACcgGCACggccggugauGCCGGCGagcaCGCCCGCa- -3'
miRNA:   3'- -AUGa-CGUG----------CGGCCGUga--GCGGGCGcg -5'
30698 5' -62.1 NC_006552.1 + 18276 0.66 0.407347
Target:  5'- aUGCUGCgagugaaguucgucuAuCGCCuacccggcggaGGCAUcCGCCUGCGCa -3'
miRNA:   3'- -AUGACG---------------U-GCGG-----------CCGUGaGCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 13971 0.66 0.403825
Target:  5'- aGCUGCGCgugaaugaaGCCGcCGaugagCGCCUGCGCc -3'
miRNA:   3'- aUGACGUG---------CGGCcGUga---GCGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 126 0.66 0.403825
Target:  5'- gUACUGCAaCGgaacCUGGaCGC-CGCCgGCGCc -3'
miRNA:   3'- -AUGACGU-GC----GGCC-GUGaGCGGgCGCG- -5'
30698 5' -62.1 NC_006552.1 + 51373 0.66 0.403825
Target:  5'- cGCUGUAggUGCCGGCGCgcaCGUUCaucagGCGCc -3'
miRNA:   3'- aUGACGU--GCGGCCGUGa--GCGGG-----CGCG- -5'
30698 5' -62.1 NC_006552.1 + 32552 0.66 0.402947
Target:  5'- uUGCgaGCGCGCUccugcugGGCcuGCUgaGCCUGCGCg -3'
miRNA:   3'- -AUGa-CGUGCGG-------CCG--UGAg-CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 55451 0.66 0.386504
Target:  5'- ---aGCaugGCGCCGGCcuGCugaucaaucuUCGCCCGCuGCu -3'
miRNA:   3'- augaCG---UGCGGCCG--UG----------AGCGGGCG-CG- -5'
30698 5' -62.1 NC_006552.1 + 19415 0.66 0.386504
Target:  5'- aGCgGUACGCCGuGUccgGCUUGUCCGUcaGCa -3'
miRNA:   3'- aUGaCGUGCGGC-CG---UGAGCGGGCG--CG- -5'
30698 5' -62.1 NC_006552.1 + 31076 0.66 0.385651
Target:  5'- aACgGCAUGCCGGaguGCUCggaugccgcccagGCuuGCGCc -3'
miRNA:   3'- aUGaCGUGCGGCCg--UGAG-------------CGggCGCG- -5'
30698 5' -62.1 NC_006552.1 + 38793 0.66 0.37803
Target:  5'- ---aGCGCGCCGGCA-UCGgucacuUCCGCGa -3'
miRNA:   3'- augaCGUGCGGCCGUgAGC------GGGCGCg -5'
30698 5' -62.1 NC_006552.1 + 4309 0.66 0.37803
Target:  5'- gUGCgGCGCaCCGGCGCUgGCauauCGgGCg -3'
miRNA:   3'- -AUGaCGUGcGGCCGUGAgCGg---GCgCG- -5'
30698 5' -62.1 NC_006552.1 + 53622 0.66 0.37803
Target:  5'- uUGCUGCcacuGCGCCGGCcCaggGCCUGCa- -3'
miRNA:   3'- -AUGACG----UGCGGCCGuGag-CGGGCGcg -5'
30698 5' -62.1 NC_006552.1 + 11669 0.66 0.369681
Target:  5'- cACcGCGCgauGCCGGaCGCccaaGCCUGCGCc -3'
miRNA:   3'- aUGaCGUG---CGGCC-GUGag--CGGGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 4937 0.67 0.361459
Target:  5'- gGCcGCGCGCgGGCuuUCcCgCCGCGCc -3'
miRNA:   3'- aUGaCGUGCGgCCGugAGcG-GGCGCG- -5'
30698 5' -62.1 NC_006552.1 + 20785 0.67 0.353366
Target:  5'- gAUUGCGCuGCCGGCcggcgaaaccgGCUCGaguaCGUGCu -3'
miRNA:   3'- aUGACGUG-CGGCCG-----------UGAGCgg--GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.