Results 61 - 68 of 68 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30698 | 5' | -62.1 | NC_006552.1 | + | 51373 | 0.66 | 0.403825 |
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Target: 5'- cGCUGUAggUGCCGGCGCgcaCGUUCaucagGCGCc -3' miRNA: 3'- aUGACGU--GCGGCCGUGa--GCGGG-----CGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 18276 | 0.66 | 0.407347 |
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Target: 5'- aUGCUGCgagugaaguucgucuAuCGCCuacccggcggaGGCAUcCGCCUGCGCa -3' miRNA: 3'- -AUGACG---------------U-GCGG-----------CCGUGaGCGGGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 39401 | 0.66 | 0.412667 |
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Target: 5'- gUACcgGCACggccggugauGCCGGCGagcaCGCCCGCa- -3' miRNA: 3'- -AUGa-CGUG----------CGGCCGUga--GCGGGCGcg -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 65123 | 0.66 | 0.412667 |
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Target: 5'- aACgUGCGCGgcaUGGUugUaugcCGCCCGCGUc -3' miRNA: 3'- aUG-ACGUGCg--GCCGugA----GCGGGCGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 24599 | 0.66 | 0.420727 |
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Target: 5'- ---cGCugGuCCGggucgauggugauGCGCUCGCCCaugucGCGCa -3' miRNA: 3'- augaCGugC-GGC-------------CGUGAGCGGG-----CGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 52195 | 0.66 | 0.421628 |
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Target: 5'- aGCUGCucGgGCCGuaGCUgCgGCCCaGCGCa -3' miRNA: 3'- aUGACG--UgCGGCcgUGA-G-CGGG-CGCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 6153 | 0.66 | 0.421628 |
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Target: 5'- aGCUGuCACccgaacacgagGCUGGCGCUCuGCgCGuCGCu -3' miRNA: 3'- aUGAC-GUG-----------CGGCCGUGAG-CGgGC-GCG- -5' |
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| 30698 | 5' | -62.1 | NC_006552.1 | + | 61502 | 0.66 | 0.421628 |
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Target: 5'- -cCUGCuuCGuuCCGGCAgUUGCUCGCuGCg -3' miRNA: 3'- auGACGu-GC--GGCCGUgAGCGGGCG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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