miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30718 3' -58.8 NC_006552.1 + 64012 0.66 0.564242
Target:  5'- cGGCAcaccGCUUcgugACGCGCCUGCAucGGUagagcaGGCa -3'
miRNA:   3'- uCCGU----CGGA----UGCGUGGGCGU--UCA------CCG- -5'
30718 3' -58.8 NC_006552.1 + 10466 0.66 0.564242
Target:  5'- cAGGCgAGCCaGCGCAgugCCGCcuucUGGCa -3'
miRNA:   3'- -UCCG-UCGGaUGCGUg--GGCGuuc-ACCG- -5'
30718 3' -58.8 NC_006552.1 + 36955 0.66 0.564242
Target:  5'- cAGuCGGCUcagGCGCACgCuCAGGUGGCu -3'
miRNA:   3'- -UCcGUCGGa--UGCGUGgGcGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 28647 0.66 0.564242
Target:  5'- cGGCGGCCgUAgGCAaucauggCUGCA-GUGGUg -3'
miRNA:   3'- uCCGUCGG-AUgCGUg------GGCGUuCACCG- -5'
30718 3' -58.8 NC_006552.1 + 15977 0.66 0.564242
Target:  5'- cGGCAGCCUgcuggaGCGCGgCCUGCugcaccaacUGGUc -3'
miRNA:   3'- uCCGUCGGA------UGCGU-GGGCGuuc------ACCG- -5'
30718 3' -58.8 NC_006552.1 + 44563 0.66 0.553707
Target:  5'- cGGGCAgcGCCUGCuGC-CUgGCAcgAGUGaGCa -3'
miRNA:   3'- -UCCGU--CGGAUG-CGuGGgCGU--UCAC-CG- -5'
30718 3' -58.8 NC_006552.1 + 28685 0.66 0.552656
Target:  5'- cGGCGGCgCcACGcCGCCUGgCAAGaucggccUGGCa -3'
miRNA:   3'- uCCGUCG-GaUGC-GUGGGC-GUUC-------ACCG- -5'
30718 3' -58.8 NC_006552.1 + 34521 0.66 0.543231
Target:  5'- cGGCAGCUcgaucUGguCCaUGUAGGUGGCg -3'
miRNA:   3'- uCCGUCGGau---GCguGG-GCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 61188 0.66 0.543231
Target:  5'- cGGCaAGCCUGCGCcgauAUCgGCugcuGG-GGCg -3'
miRNA:   3'- uCCG-UCGGAUGCG----UGGgCGu---UCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 32355 0.66 0.543231
Target:  5'- cGGCGGCUU-CGCGCaCUGCGucguugagccAGUcGGCc -3'
miRNA:   3'- uCCGUCGGAuGCGUG-GGCGU----------UCA-CCG- -5'
30718 3' -58.8 NC_006552.1 + 58914 0.66 0.53282
Target:  5'- cGGGCAGCCaGCaGCGCCuUGUAAc-GGCc -3'
miRNA:   3'- -UCCGUCGGaUG-CGUGG-GCGUUcaCCG- -5'
30718 3' -58.8 NC_006552.1 + 58201 0.66 0.53282
Target:  5'- uGGCcgaAGCC-ACGCugCgC-CGGGUGGCu -3'
miRNA:   3'- uCCG---UCGGaUGCGugG-GcGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 39272 0.66 0.53282
Target:  5'- cAGGUgacAGCCaGCGCugCCggcGCAGGaagcGGCa -3'
miRNA:   3'- -UCCG---UCGGaUGCGugGG---CGUUCa---CCG- -5'
30718 3' -58.8 NC_006552.1 + 56326 0.66 0.522482
Target:  5'- aAGGCuacauCCaGCGUgACCCGaAAGUGGCg -3'
miRNA:   3'- -UCCGuc---GGaUGCG-UGGGCgUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 6647 0.67 0.502047
Target:  5'- cAGGCAGCCcggACaC-CCCGCGaucaaugaAGUcGGCa -3'
miRNA:   3'- -UCCGUCGGa--UGcGuGGGCGU--------UCA-CCG- -5'
30718 3' -58.8 NC_006552.1 + 60707 0.67 0.502047
Target:  5'- aAGGUAGgaagACGguCACCCGCcGAGUGGUg -3'
miRNA:   3'- -UCCGUCgga-UGC--GUGGGCG-UUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 26095 0.67 0.491961
Target:  5'- gGGGCaucugcacgaAGCCguaGCGCucauCgUGCAGGUGGUa -3'
miRNA:   3'- -UCCG----------UCGGa--UGCGu---GgGCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 35833 0.67 0.48197
Target:  5'- uGGCAGCCUGaGC-CgCCGCcAGUuGGUu -3'
miRNA:   3'- uCCGUCGGAUgCGuG-GGCGuUCA-CCG- -5'
30718 3' -58.8 NC_006552.1 + 4815 0.67 0.48197
Target:  5'- cGGgGGCgaUGCGCACgCGCAcAG-GGCg -3'
miRNA:   3'- uCCgUCGg-AUGCGUGgGCGU-UCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 52115 0.67 0.472078
Target:  5'- aAGGCAGCagagcccaGCGCuACCC---AGUGGCg -3'
miRNA:   3'- -UCCGUCGga------UGCG-UGGGcguUCACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.