miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30718 3' -58.8 NC_006552.1 + 52115 0.67 0.472078
Target:  5'- aAGGCAGCagagcccaGCGCuACCC---AGUGGCg -3'
miRNA:   3'- -UCCGUCGga------UGCG-UGGGcguUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 32662 0.67 0.462289
Target:  5'- uGGGCcugcugAGCCUGCGCgaucACCUGCu--UGGUg -3'
miRNA:   3'- -UCCG------UCGGAUGCG----UGGGCGuucACCG- -5'
30718 3' -58.8 NC_006552.1 + 32774 0.68 0.452608
Target:  5'- cGGGCAcgCUACGCACCUGCccuugGGUg -3'
miRNA:   3'- -UCCGUcgGAUGCGUGGGCGuuca-CCG- -5'
30718 3' -58.8 NC_006552.1 + 58432 0.68 0.451647
Target:  5'- cAGGCcucgaucAGCCgcUugGCACCgucguCGCAGGcGGCg -3'
miRNA:   3'- -UCCG-------UCGG--AugCGUGG-----GCGUUCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 40577 0.68 0.44304
Target:  5'- uGGUGGCC-ACGUACCaCGCAcGcUGGUc -3'
miRNA:   3'- uCCGUCGGaUGCGUGG-GCGUuC-ACCG- -5'
30718 3' -58.8 NC_006552.1 + 16033 0.68 0.433585
Target:  5'- --aCGGCCUGCGCAgCaGCAccagaaAGUGGCc -3'
miRNA:   3'- uccGUCGGAUGCGUgGgCGU------UCACCG- -5'
30718 3' -58.8 NC_006552.1 + 56226 0.68 0.42425
Target:  5'- uGGGCGGagaaaggCUACGCACCCaccgucGCAGaacUGGCa -3'
miRNA:   3'- -UCCGUCg------GAUGCGUGGG------CGUUc--ACCG- -5'
30718 3' -58.8 NC_006552.1 + 62753 0.68 0.423323
Target:  5'- aGGGCGGgCgCUGcCGCGCCUGCGAGcgacgccUGGa -3'
miRNA:   3'- -UCCGUC-G-GAU-GCGUGGGCGUUC-------ACCg -5'
30718 3' -58.8 NC_006552.1 + 48506 0.69 0.39698
Target:  5'- cGGCcugAGCCcGCGCGCCCaGCAuccugaacGGaGGCa -3'
miRNA:   3'- uCCG---UCGGaUGCGUGGG-CGU--------UCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 45060 0.69 0.388144
Target:  5'- uGGCGuGCCUGCGU-UCCGguGGUcgGGCg -3'
miRNA:   3'- uCCGU-CGGAUGCGuGGGCguUCA--CCG- -5'
30718 3' -58.8 NC_006552.1 + 47863 0.69 0.354117
Target:  5'- aAGGCAaguuCCUGCGCACCaucaaCAAG-GGCa -3'
miRNA:   3'- -UCCGUc---GGAUGCGUGGgc---GUUCaCCG- -5'
30718 3' -58.8 NC_006552.1 + 14986 0.7 0.337911
Target:  5'- --cCAGCUUGCGCugUUGUcGGUGGCg -3'
miRNA:   3'- uccGUCGGAUGCGugGGCGuUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 5116 0.7 0.337911
Target:  5'- cGGGCGGUCauUGCgGCACCUGCAc--GGCg -3'
miRNA:   3'- -UCCGUCGG--AUG-CGUGGGCGUucaCCG- -5'
30718 3' -58.8 NC_006552.1 + 44182 0.7 0.327669
Target:  5'- cGGCGcGCCgacgguccaugucuuCGCGCUcguggCGCAGGUGGCg -3'
miRNA:   3'- uCCGU-CGGau-------------GCGUGG-----GCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 19953 0.7 0.314626
Target:  5'- aGGcGCGGCCUGCGCAucgagcacgUCCGCcu-UGGCc -3'
miRNA:   3'- -UC-CGUCGGAUGCGU---------GGGCGuucACCG- -5'
30718 3' -58.8 NC_006552.1 + 38502 0.71 0.278557
Target:  5'- cGGCcgugauguuGCUUACGCGCUCGauGGUGGCg -3'
miRNA:   3'- uCCGu--------CGGAUGCGUGGGCguUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 21500 0.73 0.195071
Target:  5'- cGGGUAGCUguaggucgcUGCGCugCCGCuuugcguGGUGGUc -3'
miRNA:   3'- -UCCGUCGG---------AUGCGugGGCGu------UCACCG- -5'
30718 3' -58.8 NC_006552.1 + 22216 0.73 0.195071
Target:  5'- aAGGguGCCggugACGCgAUCCGCugccGUGGCc -3'
miRNA:   3'- -UCCguCGGa---UGCG-UGGGCGuu--CACCG- -5'
30718 3' -58.8 NC_006552.1 + 20600 0.74 0.180296
Target:  5'- cGGGCGGCCcaagUAucgaccgccuccUGCACCgCGCGGGUGGUu -3'
miRNA:   3'- -UCCGUCGG----AU------------GCGUGG-GCGUUCACCG- -5'
30718 3' -58.8 NC_006552.1 + 26555 0.75 0.153698
Target:  5'- cAGGCgcucGGCCUGCGCGCCauCGUAGGUGa- -3'
miRNA:   3'- -UCCG----UCGGAUGCGUGG--GCGUUCACcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.