Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30718 | 3' | -58.8 | NC_006552.1 | + | 2051 | 0.67 | 0.472078 |
Target: 5'- cAGGC-GCUUgaGCGCGCCgGCGucGUGcGCg -3' miRNA: 3'- -UCCGuCGGA--UGCGUGGgCGUu-CAC-CG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 4815 | 0.67 | 0.48197 |
Target: 5'- cGGgGGCgaUGCGCACgCGCAcAG-GGCg -3' miRNA: 3'- uCCgUCGg-AUGCGUGgGCGU-UCaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 5116 | 0.7 | 0.337911 |
Target: 5'- cGGGCGGUCauUGCgGCACCUGCAc--GGCg -3' miRNA: 3'- -UCCGUCGG--AUG-CGUGGGCGUucaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 5799 | 0.8 | 0.073089 |
Target: 5'- aAGcCAGCCcaACGCGCCCGCAAG-GGCg -3' miRNA: 3'- -UCcGUCGGa-UGCGUGGGCGUUCaCCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 6647 | 0.67 | 0.502047 |
Target: 5'- cAGGCAGCCcggACaC-CCCGCGaucaaugaAGUcGGCa -3' miRNA: 3'- -UCCGUCGGa--UGcGuGGGCGU--------UCA-CCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 10466 | 0.66 | 0.564242 |
Target: 5'- cAGGCgAGCCaGCGCAgugCCGCcuucUGGCa -3' miRNA: 3'- -UCCG-UCGGaUGCGUg--GGCGuuc-ACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 14986 | 0.7 | 0.337911 |
Target: 5'- --cCAGCUUGCGCugUUGUcGGUGGCg -3' miRNA: 3'- uccGUCGGAUGCGugGGCGuUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 15977 | 0.66 | 0.564242 |
Target: 5'- cGGCAGCCUgcuggaGCGCGgCCUGCugcaccaacUGGUc -3' miRNA: 3'- uCCGUCGGA------UGCGU-GGGCGuuc------ACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 16033 | 0.68 | 0.433585 |
Target: 5'- --aCGGCCUGCGCAgCaGCAccagaaAGUGGCc -3' miRNA: 3'- uccGUCGGAUGCGUgGgCGU------UCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 19953 | 0.7 | 0.314626 |
Target: 5'- aGGcGCGGCCUGCGCAucgagcacgUCCGCcu-UGGCc -3' miRNA: 3'- -UC-CGUCGGAUGCGU---------GGGCGuucACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 20600 | 0.74 | 0.180296 |
Target: 5'- cGGGCGGCCcaagUAucgaccgccuccUGCACCgCGCGGGUGGUu -3' miRNA: 3'- -UCCGUCGG----AU------------GCGUGG-GCGUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 21500 | 0.73 | 0.195071 |
Target: 5'- cGGGUAGCUguaggucgcUGCGCugCCGCuuugcguGGUGGUc -3' miRNA: 3'- -UCCGUCGG---------AUGCGugGGCGu------UCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 22216 | 0.73 | 0.195071 |
Target: 5'- aAGGguGCCggugACGCgAUCCGCugccGUGGCc -3' miRNA: 3'- -UCCguCGGa---UGCG-UGGGCGuu--CACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 26095 | 0.67 | 0.491961 |
Target: 5'- gGGGCaucugcacgaAGCCguaGCGCucauCgUGCAGGUGGUa -3' miRNA: 3'- -UCCG----------UCGGa--UGCGu---GgGCGUUCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 26555 | 0.75 | 0.153698 |
Target: 5'- cAGGCgcucGGCCUGCGCGCCauCGUAGGUGa- -3' miRNA: 3'- -UCCG----UCGGAUGCGUGG--GCGUUCACcg -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 28647 | 0.66 | 0.564242 |
Target: 5'- cGGCGGCCgUAgGCAaucauggCUGCA-GUGGUg -3' miRNA: 3'- uCCGUCGG-AUgCGUg------GGCGUuCACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 28685 | 0.66 | 0.552656 |
Target: 5'- cGGCGGCgCcACGcCGCCUGgCAAGaucggccUGGCa -3' miRNA: 3'- uCCGUCG-GaUGC-GUGGGC-GUUC-------ACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 32355 | 0.66 | 0.543231 |
Target: 5'- cGGCGGCUU-CGCGCaCUGCGucguugagccAGUcGGCc -3' miRNA: 3'- uCCGUCGGAuGCGUG-GGCGU----------UCA-CCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 32662 | 0.67 | 0.462289 |
Target: 5'- uGGGCcugcugAGCCUGCGCgaucACCUGCu--UGGUg -3' miRNA: 3'- -UCCG------UCGGAUGCG----UGGGCGuucACCG- -5' |
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30718 | 3' | -58.8 | NC_006552.1 | + | 32774 | 0.68 | 0.452608 |
Target: 5'- cGGGCAcgCUACGCACCUGCccuugGGUg -3' miRNA: 3'- -UCCGUcgGAUGCGUGGGCGuuca-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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