Results 1 - 20 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30720 | 5' | -61.2 | NC_006552.1 | + | 53522 | 1.13 | 0.00019 |
Target: 5'- aGGCUCACCGCGCGAUGCCGGACGCCCa -3' miRNA: 3'- -CCGAGUGGCGCGCUACGGCCUGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 25799 | 0.75 | 0.134646 |
Target: 5'- cGGCacgGCCG-GUGAUGCCGGcgagcACGCCCg -3' miRNA: 3'- -CCGag-UGGCgCGCUACGGCC-----UGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 35286 | 0.74 | 0.142224 |
Target: 5'- gGGCUCauGCCGCGCagggcguccgacaugGAUGCCGGAUccauugcggcgaugGCCUc -3' miRNA: 3'- -CCGAG--UGGCGCG---------------CUACGGCCUG--------------CGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 49859 | 0.74 | 0.161442 |
Target: 5'- cGGCUCGaCGC-CGc-GUCGGACGCCCg -3' miRNA: 3'- -CCGAGUgGCGcGCuaCGGCCUGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 2657 | 0.73 | 0.174336 |
Target: 5'- gGGCUagggACCGCGCGgcGCCGaucaACGCUCg -3' miRNA: 3'- -CCGAg---UGGCGCGCuaCGGCc---UGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 44089 | 0.73 | 0.183434 |
Target: 5'- cGC-CGCCGCGCucuugGCCGG-CGCCUg -3' miRNA: 3'- cCGaGUGGCGCGcua--CGGCCuGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 20917 | 0.72 | 0.204936 |
Target: 5'- cGGCgcaucgggaaucucCACCGUGguguCGAUGuCCGGGCGUCCg -3' miRNA: 3'- -CCGa-------------GUGGCGC----GCUAC-GGCCUGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 37817 | 0.72 | 0.224121 |
Target: 5'- uGGCau-CUGCGCGAU-CUGGGCGCCg -3' miRNA: 3'- -CCGaguGGCGCGCUAcGGCCUGCGGg -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 38953 | 0.71 | 0.229715 |
Target: 5'- cGGCcggaCGCCaGCGCGAUGuuGuGCGCCa -3' miRNA: 3'- -CCGa---GUGG-CGCGCUACggCcUGCGGg -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 61708 | 0.71 | 0.235426 |
Target: 5'- cGGCauccUCACCGCGCGcgGgUacGCGCCCu -3' miRNA: 3'- -CCG----AGUGGCGCGCuaCgGccUGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 32693 | 0.71 | 0.247206 |
Target: 5'- uGGUgucgUCGCCggccgGCGCGggGCCGGuggaGCGCUCg -3' miRNA: 3'- -CCG----AGUGG-----CGCGCuaCGGCC----UGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 14868 | 0.71 | 0.247206 |
Target: 5'- aGGCUCGCCagGUGC--UGCCGGAUcgGCaCCg -3' miRNA: 3'- -CCGAGUGG--CGCGcuACGGCCUG--CG-GG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 51379 | 0.7 | 0.263877 |
Target: 5'- uGGCaaaACUuCGCGAgaaguacgcgacgcUGCCGGACGCCa -3' miRNA: 3'- -CCGag-UGGcGCGCU--------------ACGGCCUGCGGg -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 11487 | 0.7 | 0.278789 |
Target: 5'- cGGUacUCGCUGC-CGGUGa-GGAUGCCCa -3' miRNA: 3'- -CCG--AGUGGCGcGCUACggCCUGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 27843 | 0.7 | 0.292294 |
Target: 5'- uGGCagGCCGUaGCcguccaccuuGAUGCCGGcgucgauguucACGCCCa -3' miRNA: 3'- -CCGagUGGCG-CG----------CUACGGCC-----------UGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 21168 | 0.7 | 0.292294 |
Target: 5'- aGGCgcauccgGCCGCGuCGGUGCCGGcACaUCCg -3' miRNA: 3'- -CCGag-----UGGCGC-GCUACGGCC-UGcGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 38162 | 0.7 | 0.299236 |
Target: 5'- uGCUgGCCGCGguagcuguUGGUGCUGGgaACGUCCu -3' miRNA: 3'- cCGAgUGGCGC--------GCUACGGCC--UGCGGG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 25460 | 0.7 | 0.299236 |
Target: 5'- gGGCUUACUgcccaGCGCGAUGUugaGGAUGUgCg -3' miRNA: 3'- -CCGAGUGG-----CGCGCUACGg--CCUGCGgG- -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 57302 | 0.69 | 0.306306 |
Target: 5'- uGGCUCaacgauGCCGCGCGcagugGCCuGGCGCa- -3' miRNA: 3'- -CCGAG------UGGCGCGCua---CGGcCUGCGgg -5' |
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30720 | 5' | -61.2 | NC_006552.1 | + | 26164 | 0.69 | 0.306306 |
Target: 5'- cGUUgGCgCGCGCGAUcaGCa-GACGCCCg -3' miRNA: 3'- cCGAgUG-GCGCGCUA--CGgcCUGCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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