miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30720 5' -61.2 NC_006552.1 + 60159 0.66 0.512331
Target:  5'- cGGCagaUCGCCGgccaGCacuuccGCCGGAucCGCCCa -3'
miRNA:   3'- -CCG---AGUGGCg---CGcua---CGGCCU--GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 51379 0.7 0.263877
Target:  5'- uGGCaaaACUuCGCGAgaaguacgcgacgcUGCCGGACGCCa -3'
miRNA:   3'- -CCGag-UGGcGCGCU--------------ACGGCCUGCGGg -5'
30720 5' -61.2 NC_006552.1 + 11487 0.7 0.278789
Target:  5'- cGGUacUCGCUGC-CGGUGa-GGAUGCCCa -3'
miRNA:   3'- -CCG--AGUGGCGcGCUACggCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 27843 0.7 0.292294
Target:  5'- uGGCagGCCGUaGCcguccaccuuGAUGCCGGcgucgauguucACGCCCa -3'
miRNA:   3'- -CCGagUGGCG-CG----------CUACGGCC-----------UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 21168 0.7 0.292294
Target:  5'- aGGCgcauccgGCCGCGuCGGUGCCGGcACaUCCg -3'
miRNA:   3'- -CCGag-----UGGCGC-GCUACGGCC-UGcGGG- -5'
30720 5' -61.2 NC_006552.1 + 25460 0.7 0.299236
Target:  5'- gGGCUUACUgcccaGCGCGAUGUugaGGAUGUgCg -3'
miRNA:   3'- -CCGAGUGG-----CGCGCUACGg--CCUGCGgG- -5'
30720 5' -61.2 NC_006552.1 + 38162 0.7 0.299236
Target:  5'- uGCUgGCCGCGguagcuguUGGUGCUGGgaACGUCCu -3'
miRNA:   3'- cCGAgUGGCGC--------GCUACGGCC--UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 57302 0.69 0.306306
Target:  5'- uGGCUCaacgauGCCGCGCGcagugGCCuGGCGCa- -3'
miRNA:   3'- -CCGAG------UGGCGCGCua---CGGcCUGCGgg -5'
30720 5' -61.2 NC_006552.1 + 26164 0.69 0.306306
Target:  5'- cGUUgGCgCGCGCGAUcaGCa-GACGCCCg -3'
miRNA:   3'- cCGAgUG-GCGCGCUA--CGgcCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 32693 0.71 0.247206
Target:  5'- uGGUgucgUCGCCggccgGCGCGggGCCGGuggaGCGCUCg -3'
miRNA:   3'- -CCG----AGUGG-----CGCGCuaCGGCC----UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 14868 0.71 0.247206
Target:  5'- aGGCUCGCCagGUGC--UGCCGGAUcgGCaCCg -3'
miRNA:   3'- -CCGAGUGG--CGCGcuACGGCCUG--CG-GG- -5'
30720 5' -61.2 NC_006552.1 + 61708 0.71 0.235426
Target:  5'- cGGCauccUCACCGCGCGcgGgUacGCGCCCu -3'
miRNA:   3'- -CCG----AGUGGCGCGCuaCgGccUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 25799 0.75 0.134646
Target:  5'- cGGCacgGCCG-GUGAUGCCGGcgagcACGCCCg -3'
miRNA:   3'- -CCGag-UGGCgCGCUACGGCC-----UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 35286 0.74 0.142224
Target:  5'- gGGCUCauGCCGCGCagggcguccgacaugGAUGCCGGAUccauugcggcgaugGCCUc -3'
miRNA:   3'- -CCGAG--UGGCGCG---------------CUACGGCCUG--------------CGGG- -5'
30720 5' -61.2 NC_006552.1 + 49859 0.74 0.161442
Target:  5'- cGGCUCGaCGC-CGc-GUCGGACGCCCg -3'
miRNA:   3'- -CCGAGUgGCGcGCuaCGGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 2657 0.73 0.174336
Target:  5'- gGGCUagggACCGCGCGgcGCCGaucaACGCUCg -3'
miRNA:   3'- -CCGAg---UGGCGCGCuaCGGCc---UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 44089 0.73 0.183434
Target:  5'- cGC-CGCCGCGCucuugGCCGG-CGCCUg -3'
miRNA:   3'- cCGaGUGGCGCGcua--CGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 20917 0.72 0.204936
Target:  5'- cGGCgcaucgggaaucucCACCGUGguguCGAUGuCCGGGCGUCCg -3'
miRNA:   3'- -CCGa-------------GUGGCGC----GCUAC-GGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 37817 0.72 0.224121
Target:  5'- uGGCau-CUGCGCGAU-CUGGGCGCCg -3'
miRNA:   3'- -CCGaguGGCGCGCUAcGGCCUGCGGg -5'
30720 5' -61.2 NC_006552.1 + 38953 0.71 0.229715
Target:  5'- cGGCcggaCGCCaGCGCGAUGuuGuGCGCCa -3'
miRNA:   3'- -CCGa---GUGG-CGCGCUACggCcUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.