miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30720 5' -61.2 NC_006552.1 + 68 0.66 0.483166
Target:  5'- cGCUCAaCGUGCGcgGCaUGGuuguaugcCGCCCg -3'
miRNA:   3'- cCGAGUgGCGCGCuaCG-GCCu-------GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 2657 0.73 0.174336
Target:  5'- gGGCUagggACCGCGCGgcGCCGaucaACGCUCg -3'
miRNA:   3'- -CCGAg---UGGCGCGCuaCGGCc---UGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 4740 0.68 0.373163
Target:  5'- cGGCgucuccugCACCaGCuucgGCGGUGCCGGcugcgucaccugcgGCGCCa -3'
miRNA:   3'- -CCGa-------GUGG-CG----CGCUACGGCC--------------UGCGGg -5'
30720 5' -61.2 NC_006552.1 + 5308 0.67 0.445578
Target:  5'- aGCU-ACCGCGCcaguugguGAUGCCGaACugGCCCg -3'
miRNA:   3'- cCGAgUGGCGCG--------CUACGGCcUG--CGGG- -5'
30720 5' -61.2 NC_006552.1 + 6171 0.69 0.312053
Target:  5'- uGCUUGCCGCGcgcgcucaaccuugcCcuggucuuucucgaaGAUGCCGGcCGCCCa -3'
miRNA:   3'- cCGAGUGGCGC---------------G---------------CUACGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 7563 0.67 0.436437
Target:  5'- aGUUCGCCcuGCGCc-UGCgGGAUGCCg -3'
miRNA:   3'- cCGAGUGG--CGCGcuACGgCCUGCGGg -5'
30720 5' -61.2 NC_006552.1 + 10758 0.66 0.492802
Target:  5'- cGCU-GCUGCGCGGUGCUcaGGgcaugcagauugGCGCCg -3'
miRNA:   3'- cCGAgUGGCGCGCUACGG--CC------------UGCGGg -5'
30720 5' -61.2 NC_006552.1 + 11487 0.7 0.278789
Target:  5'- cGGUacUCGCUGC-CGGUGa-GGAUGCCCa -3'
miRNA:   3'- -CCG--AGUGGCGcGCUACggCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 11640 0.66 0.464173
Target:  5'- cGCuugUCGCCGuCGCccUGCCaGAgGCCCa -3'
miRNA:   3'- cCG---AGUGGC-GCGcuACGGcCUgCGGG- -5'
30720 5' -61.2 NC_006552.1 + 14818 0.69 0.335855
Target:  5'- aGCcuUCGCCGaUGUccuugccuucGAUGCUGGGCGCCUu -3'
miRNA:   3'- cCG--AGUGGC-GCG----------CUACGGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 14868 0.71 0.247206
Target:  5'- aGGCUCGCCagGUGC--UGCCGGAUcgGCaCCg -3'
miRNA:   3'- -CCGAGUGG--CGCGcuACGGCCUG--CG-GG- -5'
30720 5' -61.2 NC_006552.1 + 15194 0.66 0.473622
Target:  5'- aGGUcCACgGCcuugaUGGUGCCGGuCGCCUu -3'
miRNA:   3'- -CCGaGUGgCGc----GCUACGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 15725 0.66 0.472673
Target:  5'- cGCUCACCGaCGCGcugcAUGUagccggcauccggCGGugGCgCg -3'
miRNA:   3'- cCGAGUGGC-GCGC----UACG-------------GCCugCGgG- -5'
30720 5' -61.2 NC_006552.1 + 16350 0.68 0.351392
Target:  5'- cGGCUgACCGCcaugcagaacCGccGCCGGccCGCCCa -3'
miRNA:   3'- -CCGAgUGGCGc---------GCuaCGGCCu-GCGGG- -5'
30720 5' -61.2 NC_006552.1 + 20362 0.66 0.512331
Target:  5'- uGGCUUuCCGCGUGGaagCGGGCGaCCUc -3'
miRNA:   3'- -CCGAGuGGCGCGCUacgGCCUGC-GGG- -5'
30720 5' -61.2 NC_006552.1 + 20917 0.72 0.204936
Target:  5'- cGGCgcaucgggaaucucCACCGUGguguCGAUGuCCGGGCGUCCg -3'
miRNA:   3'- -CCGa-------------GUGGCGC----GCUAC-GGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 21168 0.7 0.292294
Target:  5'- aGGCgcauccgGCCGCGuCGGUGCCGGcACaUCCg -3'
miRNA:   3'- -CCGag-----UGGCGC-GCUACGGCC-UGcGGG- -5'
30720 5' -61.2 NC_006552.1 + 21876 0.67 0.436437
Target:  5'- uGGUccagCACCaGCGCGGcaaUGGAUGCCCc -3'
miRNA:   3'- -CCGa---GUGG-CGCGCUacgGCCUGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 22245 0.68 0.368247
Target:  5'- uGGCcguaucgaccaccagCACCcugGCGCGGaGCCGGuCGCUCg -3'
miRNA:   3'- -CCGa--------------GUGG---CGCGCUaCGGCCuGCGGG- -5'
30720 5' -61.2 NC_006552.1 + 22404 0.66 0.512331
Target:  5'- cGCUgAUgCGCGCGGUGCUucgcuGACGgCCg -3'
miRNA:   3'- cCGAgUG-GCGCGCUACGGc----CUGCgGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.