miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30722 3' -60.9 NC_006552.1 + 7926 0.66 0.499079
Target:  5'- uCGGCCau-CUGGuUgGCCUCGCGCUu -3'
miRNA:   3'- cGCCGGacuGAUC-GgUGGAGCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 4912 0.66 0.489268
Target:  5'- aGCGGCCUuAUUGagcGCUGCCuguuucaugUCGCGCUGc -3'
miRNA:   3'- -CGCCGGAcUGAU---CGGUGG---------AGCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 65078 0.66 0.479547
Target:  5'- aCGGaaCCUGGac-GCCGCCg-GCGCCGg -3'
miRNA:   3'- cGCC--GGACUgauCGGUGGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 60256 0.66 0.479547
Target:  5'- cGCGGCCgcgcgcgGGCUuucCCGCC--GCGCCa -3'
miRNA:   3'- -CGCCGGa------CUGAuc-GGUGGagCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 15490 0.66 0.479547
Target:  5'- uGCGGCUUGc---GCCugCUgCGCGUCa -3'
miRNA:   3'- -CGCCGGACugauCGGugGA-GCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 8118 0.66 0.469922
Target:  5'- cCGGCCaUGcAUcAGCCAUCU-GCGCCa -3'
miRNA:   3'- cGCCGG-AC-UGaUCGGUGGAgCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 8541 0.66 0.469922
Target:  5'- cCGGCUUG-CUGuCCACgUCGCGCg- -3'
miRNA:   3'- cGCCGGACuGAUcGGUGgAGCGCGgc -5'
30722 3' -60.9 NC_006552.1 + 56553 0.66 0.450974
Target:  5'- gGCGGCaagUGGCUGcucgccccGUggaucauccagCACCUCGCGCCc -3'
miRNA:   3'- -CGCCGg--ACUGAU--------CG-----------GUGGAGCGCGGc -5'
30722 3' -60.9 NC_006552.1 + 27766 0.66 0.450974
Target:  5'- cGCGGCUuggaUGGCUGGaaCACUUCaGCGUCa -3'
miRNA:   3'- -CGCCGG----ACUGAUCg-GUGGAG-CGCGGc -5'
30722 3' -60.9 NC_006552.1 + 12334 0.66 0.441658
Target:  5'- gGCGGCgccCUGACUgcGGUCAuCCUCgaagGCGUCGc -3'
miRNA:   3'- -CGCCG---GACUGA--UCGGU-GGAG----CGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 16344 0.66 0.441658
Target:  5'- uGCGGCC-GGCUGaCCGCCaugcagaacCGCcGCCGg -3'
miRNA:   3'- -CGCCGGaCUGAUcGGUGGa--------GCG-CGGC- -5'
30722 3' -60.9 NC_006552.1 + 58956 0.67 0.432452
Target:  5'- uGCGGCggaaCUGugUAggucGCCcCCUCGacgaGCCGa -3'
miRNA:   3'- -CGCCG----GACugAU----CGGuGGAGCg---CGGC- -5'
30722 3' -60.9 NC_006552.1 + 33552 0.67 0.432452
Target:  5'- aGCGGCC-GAC-AGCagcagGCCa-GCGCCGa -3'
miRNA:   3'- -CGCCGGaCUGaUCGg----UGGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 35935 0.67 0.42336
Target:  5'- cGCGGCCUgGGCUugGGCCuuCCa-GUGCUGu -3'
miRNA:   3'- -CGCCGGA-CUGA--UCGGu-GGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 9369 0.67 0.42336
Target:  5'- aCGGCUgaaUGcCUGGCCACUgcCGCGCaCGu -3'
miRNA:   3'- cGCCGG---ACuGAUCGGUGGa-GCGCG-GC- -5'
30722 3' -60.9 NC_006552.1 + 18753 0.67 0.42336
Target:  5'- cCGGCCUGugcaaUGGCCugUUgcugcCGUGCCGc -3'
miRNA:   3'- cGCCGGACug---AUCGGugGA-----GCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 64128 0.67 0.42336
Target:  5'- aGCuGuGCCUGAUUcGCaacgCAgCUCGCGCCGc -3'
miRNA:   3'- -CG-C-CGGACUGAuCG----GUgGAGCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 2078 0.67 0.414383
Target:  5'- cGCGGCCUG-CUGaUCgaaCUCGaCGCCGg -3'
miRNA:   3'- -CGCCGGACuGAUcGGug-GAGC-GCGGC- -5'
30722 3' -60.9 NC_006552.1 + 63659 0.67 0.414383
Target:  5'- -aGaGCCUG-CUGGCCaugaucaaggACCagGCGCCGa -3'
miRNA:   3'- cgC-CGGACuGAUCGG----------UGGagCGCGGC- -5'
30722 3' -60.9 NC_006552.1 + 11437 0.67 0.405523
Target:  5'- cCGGCUcGGC-GGgCGCCUCGCGCa- -3'
miRNA:   3'- cGCCGGaCUGaUCgGUGGAGCGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.