Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30724 | 5' | -57.3 | NC_006552.1 | + | 52080 | 1.1 | 0.000541 |
Target: 5'- cUGCACCAGCACCCGCCCAGAUCAAGCc -3' miRNA: 3'- -ACGUGGUCGUGGGCGGGUCUAGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 52944 | 0.8 | 0.079817 |
Target: 5'- cUGCGCCGGCGCCCGCcgccggugcggcauCCGGGugcgcguucaUCGAGCg -3' miRNA: 3'- -ACGUGGUCGUGGGCG--------------GGUCU----------AGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 43753 | 0.79 | 0.100803 |
Target: 5'- cGCGCCccaGCCCGCCCAGGUCGAa- -3' miRNA: 3'- aCGUGGucgUGGGCGGGUCUAGUUcg -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 60415 | 0.76 | 0.173936 |
Target: 5'- cUGCacGCCGGCACUCGCCCgcgcacuGGAcCAGGCc -3' miRNA: 3'- -ACG--UGGUCGUGGGCGGG-------UCUaGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 47107 | 0.75 | 0.193977 |
Target: 5'- cGCcugGCCAGC-CCCGUCCGGGUuuacCAGGCc -3' miRNA: 3'- aCG---UGGUCGuGGGCGGGUCUA----GUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 18281 | 0.74 | 0.217704 |
Target: 5'- cGCACCAGCagccggcaacaccugGCCuCGCCCGGG-CGcAGCa -3' miRNA: 3'- aCGUGGUCG---------------UGG-GCGGGUCUaGU-UCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 59012 | 0.74 | 0.221126 |
Target: 5'- gGCGCCgAGCAUCaCGCCCucAUCGAGUa -3' miRNA: 3'- aCGUGG-UCGUGG-GCGGGucUAGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 26529 | 0.74 | 0.232863 |
Target: 5'- aGCGgCGGCGCCggggUGUCCAGcGUCAGGCg -3' miRNA: 3'- aCGUgGUCGUGG----GCGGGUC-UAGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 12491 | 0.72 | 0.299541 |
Target: 5'- cUGCugUAGCugCCGCCCAGccgCuucGCc -3' miRNA: 3'- -ACGugGUCGugGGCGGGUCua-Guu-CG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 23170 | 0.72 | 0.299541 |
Target: 5'- gGCACCAGCGCCgccaCGUCCAGggUAAa- -3' miRNA: 3'- aCGUGGUCGUGG----GCGGGUCuaGUUcg -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 11574 | 0.72 | 0.306965 |
Target: 5'- uUGCuGCCAcuGCGCCgGCCCAGggCcuGCa -3' miRNA: 3'- -ACG-UGGU--CGUGGgCGGGUCuaGuuCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 24885 | 0.72 | 0.31453 |
Target: 5'- aGCACCAGgAugcgaaacacCCCGCCCAuGUCGauGGCc -3' miRNA: 3'- aCGUGGUCgU----------GGGCGGGUcUAGU--UCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 50514 | 0.71 | 0.322234 |
Target: 5'- gGCGCCGGCAgCCGUCaag--CGAGCa -3' miRNA: 3'- aCGUGGUCGUgGGCGGgucuaGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 24453 | 0.71 | 0.354451 |
Target: 5'- cGCACCAGCGCCauguagCGCUCuGGUaccAGCa -3' miRNA: 3'- aCGUGGUCGUGG------GCGGGuCUAgu-UCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 60893 | 0.71 | 0.362852 |
Target: 5'- cGCACCGGCGCUgGCau--AUCGGGCg -3' miRNA: 3'- aCGUGGUCGUGGgCGggucUAGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 62192 | 0.7 | 0.37053 |
Target: 5'- gGCGCCAGgGCcagaucaCCGCCUGGucauuGUCGGGCg -3' miRNA: 3'- aCGUGGUCgUG-------GGCGGGUC-----UAGUUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 54822 | 0.7 | 0.37139 |
Target: 5'- -cCGCCAGCACCuCGaCUCAGGUaaGAGCg -3' miRNA: 3'- acGUGGUCGUGG-GC-GGGUCUAg-UUCG- -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 34155 | 0.7 | 0.380064 |
Target: 5'- uUGCGCCAGagccuGgCCGCCCAGcagCAGGg -3' miRNA: 3'- -ACGUGGUCg----UgGGCGGGUCua-GUUCg -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 60167 | 0.7 | 0.386217 |
Target: 5'- cGCcgGCCAGCACuuccgccggauCCGCCCAGGugaauucgaaaucaUCAAGg -3' miRNA: 3'- aCG--UGGUCGUG-----------GGCGGGUCU--------------AGUUCg -5' |
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30724 | 5' | -57.3 | NC_006552.1 | + | 48749 | 0.7 | 0.388873 |
Target: 5'- cGCAC--GCACCCgGCCCAGGU--GGCc -3' miRNA: 3'- aCGUGguCGUGGG-CGGGUCUAguUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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