miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30724 5' -57.3 NC_006552.1 + 20693 0.65 0.651435
Target:  5'- gGCGCCGGCaguccugugccGCCCGCCaucaguuccuuGAUCuucGCu -3'
miRNA:   3'- aCGUGGUCG-----------UGGGCGGgu---------CUAGuu-CG- -5'
30724 5' -57.3 NC_006552.1 + 50514 0.71 0.322234
Target:  5'- gGCGCCGGCAgCCGUCaag--CGAGCa -3'
miRNA:   3'- aCGUGGUCGUgGGCGGgucuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 24453 0.71 0.354451
Target:  5'- cGCACCAGCGCCauguagCGCUCuGGUaccAGCa -3'
miRNA:   3'- aCGUGGUCGUGG------GCGGGuCUAgu-UCG- -5'
30724 5' -57.3 NC_006552.1 + 60893 0.71 0.362852
Target:  5'- cGCACCGGCGCUgGCau--AUCGGGCg -3'
miRNA:   3'- aCGUGGUCGUGGgCGggucUAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 62192 0.7 0.37053
Target:  5'- gGCGCCAGgGCcagaucaCCGCCUGGucauuGUCGGGCg -3'
miRNA:   3'- aCGUGGUCgUG-------GGCGGGUC-----UAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 54822 0.7 0.37139
Target:  5'- -cCGCCAGCACCuCGaCUCAGGUaaGAGCg -3'
miRNA:   3'- acGUGGUCGUGG-GC-GGGUCUAg-UUCG- -5'
30724 5' -57.3 NC_006552.1 + 34155 0.7 0.380064
Target:  5'- uUGCGCCAGagccuGgCCGCCCAGcagCAGGg -3'
miRNA:   3'- -ACGUGGUCg----UgGGCGGGUCua-GUUCg -5'
30724 5' -57.3 NC_006552.1 + 60167 0.7 0.386217
Target:  5'- cGCcgGCCAGCACuuccgccggauCCGCCCAGGugaauucgaaaucaUCAAGg -3'
miRNA:   3'- aCG--UGGUCGUG-----------GGCGGGUCU--------------AGUUCg -5'
30724 5' -57.3 NC_006552.1 + 35007 0.7 0.388873
Target:  5'- cGCACCucGuCGCCCuuguugcgGCCCAGGUCcuGGGCc -3'
miRNA:   3'- aCGUGGu-C-GUGGG--------CGGGUCUAG--UUCG- -5'
30724 5' -57.3 NC_006552.1 + 24885 0.72 0.31453
Target:  5'- aGCACCAGgAugcgaaacacCCCGCCCAuGUCGauGGCc -3'
miRNA:   3'- aCGUGGUCgU----------GGGCGGGUcUAGU--UCG- -5'
30724 5' -57.3 NC_006552.1 + 11574 0.72 0.306965
Target:  5'- uUGCuGCCAcuGCGCCgGCCCAGggCcuGCa -3'
miRNA:   3'- -ACG-UGGU--CGUGGgCGGGUCuaGuuCG- -5'
30724 5' -57.3 NC_006552.1 + 23170 0.72 0.299541
Target:  5'- gGCACCAGCGCCgccaCGUCCAGggUAAa- -3'
miRNA:   3'- aCGUGGUCGUGG----GCGGGUCuaGUUcg -5'
30724 5' -57.3 NC_006552.1 + 52944 0.8 0.079817
Target:  5'- cUGCGCCGGCGCCCGCcgccggugcggcauCCGGGugcgcguucaUCGAGCg -3'
miRNA:   3'- -ACGUGGUCGUGGGCG--------------GGUCU----------AGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 43753 0.79 0.100803
Target:  5'- cGCGCCccaGCCCGCCCAGGUCGAa- -3'
miRNA:   3'- aCGUGGucgUGGGCGGGUCUAGUUcg -5'
30724 5' -57.3 NC_006552.1 + 60415 0.76 0.173936
Target:  5'- cUGCacGCCGGCACUCGCCCgcgcacuGGAcCAGGCc -3'
miRNA:   3'- -ACG--UGGUCGUGGGCGGG-------UCUaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 47107 0.75 0.193977
Target:  5'- cGCcugGCCAGC-CCCGUCCGGGUuuacCAGGCc -3'
miRNA:   3'- aCG---UGGUCGuGGGCGGGUCUA----GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 18281 0.74 0.217704
Target:  5'- cGCACCAGCagccggcaacaccugGCCuCGCCCGGG-CGcAGCa -3'
miRNA:   3'- aCGUGGUCG---------------UGG-GCGGGUCUaGU-UCG- -5'
30724 5' -57.3 NC_006552.1 + 59012 0.74 0.221126
Target:  5'- gGCGCCgAGCAUCaCGCCCucAUCGAGUa -3'
miRNA:   3'- aCGUGG-UCGUGG-GCGGGucUAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 26529 0.74 0.232863
Target:  5'- aGCGgCGGCGCCggggUGUCCAGcGUCAGGCg -3'
miRNA:   3'- aCGUgGUCGUGG----GCGGGUC-UAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 12491 0.72 0.299541
Target:  5'- cUGCugUAGCugCCGCCCAGccgCuucGCc -3'
miRNA:   3'- -ACGugGUCGugGGCGGGUCua-Guu-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.