miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30724 5' -57.3 NC_006552.1 + 2668 0.68 0.47384
Target:  5'- cGCG-CGGCGCCgaucaaCGCUCGGGUCGAGa -3'
miRNA:   3'- aCGUgGUCGUGG------GCGGGUCUAGUUCg -5'
30724 5' -57.3 NC_006552.1 + 5757 0.66 0.642763
Target:  5'- gGCgACCAGCACgCCGaucagccccaCCCAGuugaucugcgCAAGCc -3'
miRNA:   3'- aCG-UGGUCGUG-GGC----------GGGUCua--------GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 7661 0.69 0.425416
Target:  5'- --gGCCAGUACCCGCCCuacGUCcucGCu -3'
miRNA:   3'- acgUGGUCGUGGGCGGGuc-UAGuu-CG- -5'
30724 5' -57.3 NC_006552.1 + 7910 0.69 0.434867
Target:  5'- cGCGCCAcGCAUCUGCUCGGccAUCugguuGGCc -3'
miRNA:   3'- aCGUGGU-CGUGGGCGGGUC--UAGu----UCG- -5'
30724 5' -57.3 NC_006552.1 + 8124 0.69 0.444438
Target:  5'- aUGCAUCAGcCAUCUGCgCCAGGUgGucGCg -3'
miRNA:   3'- -ACGUGGUC-GUGGGCG-GGUCUAgUu-CG- -5'
30724 5' -57.3 NC_006552.1 + 8336 0.67 0.535341
Target:  5'- cGCAgcUCAGCAUCgGUCCAGAcgaugccugccUUGAGCa -3'
miRNA:   3'- aCGU--GGUCGUGGgCGGGUCU-----------AGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 8537 0.68 0.490928
Target:  5'- cGCACCGGCuugcuguccacgucGCgCGCCCAcAUCAAcGUg -3'
miRNA:   3'- aCGUGGUCG--------------UGgGCGGGUcUAGUU-CG- -5'
30724 5' -57.3 NC_006552.1 + 9536 0.66 0.621067
Target:  5'- cGCGCCGGCcaauuGCCUGaucuaCCCAGGaCAGGa -3'
miRNA:   3'- aCGUGGUCG-----UGGGC-----GGGUCUaGUUCg -5'
30724 5' -57.3 NC_006552.1 + 11574 0.72 0.306965
Target:  5'- uUGCuGCCAcuGCGCCgGCCCAGggCcuGCa -3'
miRNA:   3'- -ACG-UGGU--CGUGGgCGGGUCuaGuuCG- -5'
30724 5' -57.3 NC_006552.1 + 11940 0.68 0.504185
Target:  5'- cGCGCCAG-GCUCG-CUAGGUCgGAGCg -3'
miRNA:   3'- aCGUGGUCgUGGGCgGGUCUAG-UUCG- -5'
30724 5' -57.3 NC_006552.1 + 12491 0.72 0.299541
Target:  5'- cUGCugUAGCugCCGCCCAGccgCuucGCc -3'
miRNA:   3'- -ACGugGUCGugGGCGGGUCua-Guu-CG- -5'
30724 5' -57.3 NC_006552.1 + 12617 0.66 0.642763
Target:  5'- aUGuCGCCGGCcguagUCUGCCCGGcgCuGGCu -3'
miRNA:   3'- -AC-GUGGUCGu----GGGCGGGUCuaGuUCG- -5'
30724 5' -57.3 NC_006552.1 + 13853 0.69 0.416089
Target:  5'- gGCGCCGGUACUgGgCCAGGUaaucGGCc -3'
miRNA:   3'- aCGUGGUCGUGGgCgGGUCUAgu--UCG- -5'
30724 5' -57.3 NC_006552.1 + 16041 0.68 0.504185
Target:  5'- cGCAgCAGCACCagaaagugGCCCAGuagcCGGGUc -3'
miRNA:   3'- aCGUgGUCGUGGg-------CGGGUCua--GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 16437 0.66 0.619983
Target:  5'- cGC-CCAGU-CCCGCCCcagcgccAGGUUuuGCa -3'
miRNA:   3'- aCGuGGUCGuGGGCGGG-------UCUAGuuCG- -5'
30724 5' -57.3 NC_006552.1 + 18281 0.74 0.217704
Target:  5'- cGCACCAGCagccggcaacaccugGCCuCGCCCGGG-CGcAGCa -3'
miRNA:   3'- aCGUGGUCG---------------UGG-GCGGGUCUaGU-UCG- -5'
30724 5' -57.3 NC_006552.1 + 19177 0.68 0.514488
Target:  5'- cGCuACCGGCGCCCcgaGCCCcc--CAAGUg -3'
miRNA:   3'- aCG-UGGUCGUGGG---CGGGucuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 19793 0.66 0.610229
Target:  5'- uUGUACU-GCACCuCGCUCAGGUU-GGCc -3'
miRNA:   3'- -ACGUGGuCGUGG-GCGGGUCUAGuUCG- -5'
30724 5' -57.3 NC_006552.1 + 20549 0.67 0.556483
Target:  5'- cGCACCAcaucUACCUGCCUGG--CGAGCa -3'
miRNA:   3'- aCGUGGUc---GUGGGCGGGUCuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 20693 0.65 0.651435
Target:  5'- gGCGCCGGCaguccugugccGCCCGCCaucaguuccuuGAUCuucGCu -3'
miRNA:   3'- aCGUGGUCG-----------UGGGCGGgu---------CUAGuu-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.