Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30729 | 3' | -55.8 | NC_006552.1 | + | 65035 | 0.67 | 0.668466 |
Target: 5'- cGCGCCACucGCUGgGCAGagGUugaaaUCGACc -3' miRNA: 3'- uCGCGGUGu-UGGCgCGUCg-CA-----AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 64154 | 0.67 | 0.635628 |
Target: 5'- cGCGCCGCccuggcGCaCGCGCcGaccaGUUCGGCa -3' miRNA: 3'- uCGCGGUGu-----UG-GCGCGuCg---CAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 63556 | 0.7 | 0.455681 |
Target: 5'- uGCGCCACccGCCuGCGCGGCaucgUCGAa -3' miRNA: 3'- uCGCGGUGu-UGG-CGCGUCGca--AGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 62758 | 0.69 | 0.527324 |
Target: 5'- gGGCGCU---GCCGCGCcuGCGagCGACg -3' miRNA: 3'- -UCGCGGuguUGGCGCGu-CGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 62607 | 0.68 | 0.566873 |
Target: 5'- gAGCGCgGCAcguggguugagucuGcCCGCaugcCAGCGUUCGACc -3' miRNA: 3'- -UCGCGgUGU--------------U-GGCGc---GUCGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 61979 | 0.73 | 0.312892 |
Target: 5'- uGCGCCGCugugcagcagcgaGGCCgaacucuGCGCGGCGUUCAu- -3' miRNA: 3'- uCGCGGUG-------------UUGG-------CGCGUCGCAAGUug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 61217 | 0.7 | 0.485787 |
Target: 5'- gGGCGaCACAGCCaagGgGGCGUUCGGCu -3' miRNA: 3'- -UCGCgGUGUUGGcg-CgUCGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 56861 | 0.66 | 0.700998 |
Target: 5'- cAGCGCCGCGGCga-GCGGCGaacgCAGg -3' miRNA: 3'- -UCGCGGUGUUGgcgCGUCGCaa--GUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 55339 | 0.73 | 0.299288 |
Target: 5'- aGGCGaCCGCGACUuCGUGGgGUUCAGCc -3' miRNA: 3'- -UCGC-GGUGUUGGcGCGUCgCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 55165 | 0.67 | 0.65754 |
Target: 5'- cGGCaCCcCGACCGUGCuccauGCGcgCGACg -3' miRNA: 3'- -UCGcGGuGUUGGCGCGu----CGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 54361 | 0.67 | 0.667375 |
Target: 5'- uGCuGCCGCAAggaggagaagaucCUGCcugGCAGCGUggUCAACg -3' miRNA: 3'- uCG-CGGUGUU-------------GGCG---CGUCGCA--AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 53299 | 0.74 | 0.257262 |
Target: 5'- --gGCCGCGcagcccGCCGCGCGGCGcaCAACa -3' miRNA: 3'- ucgCGGUGU------UGGCGCGUCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 50513 | 0.73 | 0.299288 |
Target: 5'- cGGCGCCgGCAGCCGUcaAGCGagCAACa -3' miRNA: 3'- -UCGCGG-UGUUGGCGcgUCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 50082 | 0.72 | 0.354792 |
Target: 5'- gAGCGCgACAACCGCacGCGgGCGgaacgcgCAGCa -3' miRNA: 3'- -UCGCGgUGUUGGCG--CGU-CGCaa-----GUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 49579 | 1.09 | 0.000889 |
Target: 5'- gAGCGCCACAACCGCGCAGCGUUCAACu -3' miRNA: 3'- -UCGCGGUGUUGGCGCGUCGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 49003 | 0.75 | 0.226035 |
Target: 5'- gGGCaaGCC-CGGCgGCGCgAGCGUUCAGCc -3' miRNA: 3'- -UCG--CGGuGUUGgCGCG-UCGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 46422 | 0.67 | 0.635628 |
Target: 5'- uGGCGCCACcACCcagaGUGCGGCaagUCAu- -3' miRNA: 3'- -UCGCGGUGuUGG----CGCGUCGca-AGUug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 44369 | 0.66 | 0.700998 |
Target: 5'- cAGUGCCAgCAGCCGguCGgAGgGUccagUCAGCa -3' miRNA: 3'- -UCGCGGU-GUUGGC--GCgUCgCA----AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 41418 | 0.68 | 0.548589 |
Target: 5'- cGCGCCAguuCGGCCGCGUccguggggAGCGgcaUCAGu -3' miRNA: 3'- uCGCGGU---GUUGGCGCG--------UCGCa--AGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 36112 | 0.66 | 0.700998 |
Target: 5'- cGCGCC-CuGCUGCGCgccAGUGUUCu-- -3' miRNA: 3'- uCGCGGuGuUGGCGCG---UCGCAAGuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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