miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30729 3' -55.8 NC_006552.1 + 13930 0.68 0.591842
Target:  5'- cGUGCCACGACaGCGCccGCGUcgcgggccacgUCGAUg -3'
miRNA:   3'- uCGCGGUGUUGgCGCGu-CGCA-----------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 15019 0.68 0.601667
Target:  5'- cGGCGCCAguggcuuCAGCaCGCGgGGCuGcgCAGCa -3'
miRNA:   3'- -UCGCGGU-------GUUG-GCGCgUCG-CaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 16020 0.66 0.699921
Target:  5'- uGCGCCACuguccacGGCCuGCGCAGCa------ -3'
miRNA:   3'- uCGCGGUG-------UUGG-CGCGUCGcaaguug -5'
30729 3' -55.8 NC_006552.1 + 19616 0.67 0.668466
Target:  5'- uGCGCCu--GCUGUaCGGCGUUCuGCa -3'
miRNA:   3'- uCGCGGuguUGGCGcGUCGCAAGuUG- -5'
30729 3' -55.8 NC_006552.1 + 20293 0.68 0.570116
Target:  5'- uGCGCCAgCGucucgaagGCCGCGUucugcGCGUUgAACa -3'
miRNA:   3'- uCGCGGU-GU--------UGGCGCGu----CGCAAgUUG- -5'
30729 3' -55.8 NC_006552.1 + 20818 0.67 0.624663
Target:  5'- cGCGUC-CGGCgGCGUGGCGUcgAACg -3'
miRNA:   3'- uCGCGGuGUUGgCGCGUCGCAagUUG- -5'
30729 3' -55.8 NC_006552.1 + 21168 0.66 0.679358
Target:  5'- aGGCGCaucCGGCCGCGuCGGUGc-CGGCa -3'
miRNA:   3'- -UCGCGgu-GUUGGCGC-GUCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 21976 0.67 0.624663
Target:  5'- cAGCaGUaCGCGACCGUGCAGCGcccCAGu -3'
miRNA:   3'- -UCG-CG-GUGUUGGCGCGUCGCaa-GUUg -5'
30729 3' -55.8 NC_006552.1 + 26154 0.66 0.722371
Target:  5'- aAGCGCagCACGuuGgCGCGC-GCGaUCAGCa -3'
miRNA:   3'- -UCGCG--GUGU--UgGCGCGuCGCaAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26444 0.67 0.635628
Target:  5'- cGGCGCCGacuccugggGGCCGCGCAGCc------ -3'
miRNA:   3'- -UCGCGGUg--------UUGGCGCGUCGcaaguug -5'
30729 3' -55.8 NC_006552.1 + 26473 0.74 0.291931
Target:  5'- -aCGCCACAGCCGCGCcguaGGUGccuugacUCAACg -3'
miRNA:   3'- ucGCGGUGUUGGCGCG----UCGCa------AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26512 0.68 0.548589
Target:  5'- cGGCGCCugccaccagcaGCGGCgGCGCcggGGUGUcCAGCg -3'
miRNA:   3'- -UCGCGG-----------UGUUGgCGCG---UCGCAaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 26716 0.7 0.455681
Target:  5'- gGGCGCCgaagGCGucGCCGUGCAGUGggCuuuGCc -3'
miRNA:   3'- -UCGCGG----UGU--UGGCGCGUCGCaaGu--UG- -5'
30729 3' -55.8 NC_006552.1 + 26866 0.66 0.679358
Target:  5'- cGcCGCCGCGuuGCaGCGCGGCaucUUCGGCg -3'
miRNA:   3'- uC-GCGGUGU--UGgCGCGUCGc--AAGUUG- -5'
30729 3' -55.8 NC_006552.1 + 28799 0.66 0.711724
Target:  5'- cAGCGUCcacuGCGACCaGgGUGGCGgguUCAACu -3'
miRNA:   3'- -UCGCGG----UGUUGG-CgCGUCGCa--AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 30578 0.66 0.700998
Target:  5'- cAGCGCCGgGAUUGguaGCAGCGUcgCAc- -3'
miRNA:   3'- -UCGCGGUgUUGGCg--CGUCGCAa-GUug -5'
30729 3' -55.8 NC_006552.1 + 31992 0.67 0.668466
Target:  5'- cGGCGUgAaucucCGGCUGCGCGGUGUccuugUCGGCc -3'
miRNA:   3'- -UCGCGgU-----GUUGGCGCGUCGCA-----AGUUG- -5'
30729 3' -55.8 NC_006552.1 + 32478 0.66 0.722371
Target:  5'- cGCGCCACcgaacuggucgAugCGCGC-GUGgaCGGCa -3'
miRNA:   3'- uCGCGGUG-----------UugGCGCGuCGCaaGUUG- -5'
30729 3' -55.8 NC_006552.1 + 32524 0.67 0.65754
Target:  5'- cGCGCCA-AGCCGUGCuGCuugaccagGUUCAGg -3'
miRNA:   3'- uCGCGGUgUUGGCGCGuCG--------CAAGUUg -5'
30729 3' -55.8 NC_006552.1 + 33536 0.74 0.277642
Target:  5'- uGGUG-CGCAGgCGCGCAGCGgcCGACa -3'
miRNA:   3'- -UCGCgGUGUUgGCGCGUCGCaaGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.