Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30729 | 3' | -55.8 | NC_006552.1 | + | 4638 | 0.69 | 0.527324 |
Target: 5'- gGGCGCgACAcgaauuguagGCCGCGCucAGgGUcUCGACu -3' miRNA: 3'- -UCGCGgUGU----------UGGCGCG--UCgCA-AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 8418 | 0.69 | 0.537921 |
Target: 5'- cGGgGCUcaGGCCGCGCcaGGCGcgCAGCa -3' miRNA: 3'- -UCgCGGugUUGGCGCG--UCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 41418 | 0.68 | 0.548589 |
Target: 5'- cGCGCCAguuCGGCCGCGUccguggggAGCGgcaUCAGu -3' miRNA: 3'- uCGCGGU---GUUGGCGCG--------UCGCa--AGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 26512 | 0.68 | 0.548589 |
Target: 5'- cGGCGCCugccaccagcaGCGGCgGCGCcggGGUGUcCAGCg -3' miRNA: 3'- -UCGCGG-----------UGUUGgCGCG---UCGCAaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 33728 | 0.68 | 0.563634 |
Target: 5'- -aCGCCACGACaucgccaaccgccaGCGCGGCGg-CGGCa -3' miRNA: 3'- ucGCGGUGUUGg-------------CGCGUCGCaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 62607 | 0.68 | 0.566873 |
Target: 5'- gAGCGCgGCAcguggguugagucuGcCCGCaugcCAGCGUUCGACc -3' miRNA: 3'- -UCGCGgUGU--------------U-GGCGc---GUCGCAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 20293 | 0.68 | 0.570116 |
Target: 5'- uGCGCCAgCGucucgaagGCCGCGUucugcGCGUUgAACa -3' miRNA: 3'- uCGCGGU-GU--------UGGCGCGu----CGCAAgUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 13930 | 0.68 | 0.591842 |
Target: 5'- cGUGCCACGACaGCGCccGCGUcgcgggccacgUCGAUg -3' miRNA: 3'- uCGCGGUGUUGgCGCGu-CGCA-----------AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 6757 | 0.68 | 0.591842 |
Target: 5'- uGCGCCGC-ACCGuCGaucaggucuuCGGCGUcuUCGGCg -3' miRNA: 3'- uCGCGGUGuUGGC-GC----------GUCGCA--AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 12946 | 0.68 | 0.591842 |
Target: 5'- cAGCGCgCugGccuugGCCugGCGguGCGUUCGAg -3' miRNA: 3'- -UCGCG-GugU-----UGG--CGCguCGCAAGUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 15019 | 0.68 | 0.601667 |
Target: 5'- cGGCGCCAguggcuuCAGCaCGCGgGGCuGcgCAGCa -3' miRNA: 3'- -UCGCGGU-------GUUG-GCGCgUCG-CaaGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 8674 | 0.67 | 0.610419 |
Target: 5'- cGGCGCCAgauCAGCCGCaucGCuGGCGUaauaacucacgucaUCGAUa -3' miRNA: 3'- -UCGCGGU---GUUGGCG---CG-UCGCA--------------AGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 20818 | 0.67 | 0.624663 |
Target: 5'- cGCGUC-CGGCgGCGUGGCGUcgAACg -3' miRNA: 3'- uCGCGGuGUUGgCGCGUCGCAagUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 4497 | 0.67 | 0.624663 |
Target: 5'- aGGCGCaccgaGCGGCUGC-CAGCcaUCGGCg -3' miRNA: 3'- -UCGCGg----UGUUGGCGcGUCGcaAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 21976 | 0.67 | 0.624663 |
Target: 5'- cAGCaGUaCGCGACCGUGCAGCGcccCAGu -3' miRNA: 3'- -UCG-CG-GUGUUGGCGCGUCGCaa-GUUg -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 64154 | 0.67 | 0.635628 |
Target: 5'- cGCGCCGCccuggcGCaCGCGCcGaccaGUUCGGCa -3' miRNA: 3'- uCGCGGUGu-----UG-GCGCGuCg---CAAGUUG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 26444 | 0.67 | 0.635628 |
Target: 5'- cGGCGCCGacuccugggGGCCGCGCAGCc------ -3' miRNA: 3'- -UCGCGGUg--------UUGGCGCGUCGcaaguug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 5102 | 0.67 | 0.635628 |
Target: 5'- cGGCGCC-CAACuCGCG-GGCGgUCAuuGCg -3' miRNA: 3'- -UCGCGGuGUUG-GCGCgUCGCaAGU--UG- -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 46422 | 0.67 | 0.635628 |
Target: 5'- uGGCGCCACcACCcagaGUGCGGCaagUCAu- -3' miRNA: 3'- -UCGCGGUGuUGG----CGCGUCGca-AGUug -5' |
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30729 | 3' | -55.8 | NC_006552.1 | + | 12304 | 0.67 | 0.646591 |
Target: 5'- gAGgGCCugAGCCaugguGCGUAGuCGcUCGGCg -3' miRNA: 3'- -UCgCGGugUUGG-----CGCGUC-GCaAGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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