miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 5' -50.3 NC_006552.1 + 64159 0.66 0.946813
Target:  5'- -cGCCCu----GGCGcacGCGCCGACCa -3'
miRNA:   3'- uaUGGGcuacuUCGCuu-UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 61642 0.71 0.764884
Target:  5'- gAUGCCCGAggccgccGGCcGGACGuCCAACCu -3'
miRNA:   3'- -UAUGGGCUacu----UCGcUUUGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 61415 0.66 0.941877
Target:  5'- -aACCuCGAcGAAGcCGAGACGUUcACCc -3'
miRNA:   3'- uaUGG-GCUaCUUC-GCUUUGCGGuUGG- -5'
30733 5' -50.3 NC_006552.1 + 60839 0.67 0.925337
Target:  5'- -aGCCCGGcgaucgguugUGGGugcGCGAGACGUgGACUg -3'
miRNA:   3'- uaUGGGCU----------ACUU---CGCUUUGCGgUUGG- -5'
30733 5' -50.3 NC_006552.1 + 60340 0.66 0.951464
Target:  5'- gAUGCCgGAcauUGAguggccGGCGAAGgGCCAgucgcuagACCa -3'
miRNA:   3'- -UAUGGgCU---ACU------UCGCUUUgCGGU--------UGG- -5'
30733 5' -50.3 NC_006552.1 + 60308 0.7 0.775264
Target:  5'- -gGCCCcugGGUGuuccGCGAAAUGCUGACCc -3'
miRNA:   3'- uaUGGG---CUACuu--CGCUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 60135 0.67 0.927694
Target:  5'- -aACCC-AUGGuGGCGGGAgaaagugcggcagauCGCCGGCCa -3'
miRNA:   3'- uaUGGGcUACU-UCGCUUU---------------GCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 59362 0.72 0.666483
Target:  5'- ---gCCGAUGGcAGCGAucGCGCgAGCCa -3'
miRNA:   3'- uaugGGCUACU-UCGCUu-UGCGgUUGG- -5'
30733 5' -50.3 NC_006552.1 + 58599 0.66 0.955834
Target:  5'- -aGCCCGuUGAuggugGGCGucgGugGCCGcGCCg -3'
miRNA:   3'- uaUGGGCuACU-----UCGCu--UugCGGU-UGG- -5'
30733 5' -50.3 NC_006552.1 + 58395 0.66 0.941877
Target:  5'- -gGCUaCGGUGAGcGCGAAGgGCagCAACCg -3'
miRNA:   3'- uaUGG-GCUACUU-CGCUUUgCG--GUUGG- -5'
30733 5' -50.3 NC_006552.1 + 57243 0.68 0.899219
Target:  5'- -gGCaCCGccucGAGCGGAACGCCcucGCCg -3'
miRNA:   3'- uaUG-GGCuac-UUCGCUUUGCGGu--UGG- -5'
30733 5' -50.3 NC_006552.1 + 56767 0.66 0.959929
Target:  5'- uUGCCCG-UGAAGaguuCGAa--GCCAGCUa -3'
miRNA:   3'- uAUGGGCuACUUC----GCUuugCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 54565 0.66 0.951464
Target:  5'- -gGCCUGGUGAucGUGGAcacCGCCAcggcgaagGCCg -3'
miRNA:   3'- uaUGGGCUACUu-CGCUUu--GCGGU--------UGG- -5'
30733 5' -50.3 NC_006552.1 + 53512 0.68 0.87666
Target:  5'- -gACCUGGUGGAggcucaccgcGCGAugccgGACGCCcaAGCCu -3'
miRNA:   3'- uaUGGGCUACUU----------CGCU-----UUGCGG--UUGG- -5'
30733 5' -50.3 NC_006552.1 + 53080 0.67 0.919241
Target:  5'- uUGCCCaGUGAAGacccgUGCCAGCCc -3'
miRNA:   3'- uAUGGGcUACUUCgcuuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 51854 0.74 0.565205
Target:  5'- -gGCCuuCGAgcAAGCGGAGCGCCAGCg -3'
miRNA:   3'- uaUGG--GCUacUUCGCUUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 51543 0.66 0.955834
Target:  5'- -gACgCCGAggcGAAGCGGAucacCGCCGcACUg -3'
miRNA:   3'- uaUG-GGCUa--CUUCGCUUu---GCGGU-UGG- -5'
30733 5' -50.3 NC_006552.1 + 51245 0.71 0.722052
Target:  5'- ---gCCGAUG-AGCGccuGCGCCAGCUu -3'
miRNA:   3'- uaugGGCUACuUCGCuu-UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 50470 0.72 0.677712
Target:  5'- -gGCCCGAucUGggGCGGAcugauuaccGCGgaacaaCCAGCCa -3'
miRNA:   3'- uaUGGGCU--ACuuCGCUU---------UGC------GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 50388 0.73 0.655221
Target:  5'- --uCCCGAcaUGAAcGCGAAACGCaaaGCCa -3'
miRNA:   3'- uauGGGCU--ACUU-CGCUUUGCGgu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.