miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 5' -50.3 NC_006552.1 + 56767 0.66 0.959929
Target:  5'- uUGCCCG-UGAAGaguuCGAa--GCCAGCUa -3'
miRNA:   3'- uAUGGGCuACUUC----GCUuugCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 1762 0.72 0.711077
Target:  5'- uGUACCUGGUG-GGCGAG--GCCAACg -3'
miRNA:   3'- -UAUGGGCUACuUCGCUUugCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 51245 0.71 0.722052
Target:  5'- ---gCCGAUG-AGCGccuGCGCCAGCUu -3'
miRNA:   3'- uaugGGCUACuUCGCuu-UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 24664 0.71 0.764884
Target:  5'- cGUACuuGAUGAcaaAGCGuugcAACGCCAcguCCu -3'
miRNA:   3'- -UAUGggCUACU---UCGCu---UUGCGGUu--GG- -5'
30733 5' -50.3 NC_006552.1 + 61642 0.71 0.764884
Target:  5'- gAUGCCCGAggccgccGGCcGGACGuCCAACCu -3'
miRNA:   3'- -UAUGGGCUacu----UCGcUUUGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 11738 0.7 0.775264
Target:  5'- cUugCCGGUGAGGCcGGAGCGgCGAa- -3'
miRNA:   3'- uAugGGCUACUUCG-CUUUGCgGUUgg -5'
30733 5' -50.3 NC_006552.1 + 60308 0.7 0.775264
Target:  5'- -gGCCCcugGGUGuuccGCGAAAUGCUGACCc -3'
miRNA:   3'- uaUGGG---CUACuu--CGCUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 33764 0.7 0.815104
Target:  5'- cAUugCUGuUG-AGCaGAACGCCGGCCg -3'
miRNA:   3'- -UAugGGCuACuUCGcUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 49008 0.69 0.833855
Target:  5'- -aGCCCGgcGgcGCGAG-CGuUCAGCCg -3'
miRNA:   3'- uaUGGGCuaCuuCGCUUuGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 25826 0.72 0.688895
Target:  5'- -cGCCCGcAUGAaccucGGCGAuGGCGCCAcuGCUg -3'
miRNA:   3'- uaUGGGC-UACU-----UCGCU-UUGCGGU--UGG- -5'
30733 5' -50.3 NC_006552.1 + 5748 0.72 0.677712
Target:  5'- ---aCCGAUGAcGGCGAccagcACGCCGAUCa -3'
miRNA:   3'- uaugGGCUACU-UCGCUu----UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 50470 0.72 0.677712
Target:  5'- -gGCCCGAucUGggGCGGAcugauuaccGCGgaacaaCCAGCCa -3'
miRNA:   3'- uaUGGGCU--ACuuCGCUU---------UGC------GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 17482 0.78 0.371665
Target:  5'- gGUACCaCGGUGAAGCGAuucggAGCGUCcuuACCa -3'
miRNA:   3'- -UAUGG-GCUACUUCGCU-----UUGCGGu--UGG- -5'
30733 5' -50.3 NC_006552.1 + 47705 0.76 0.468334
Target:  5'- -aGCCggaGGUGgcGCGuAACGCCGGCCa -3'
miRNA:   3'- uaUGGg--CUACuuCGCuUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 10658 0.74 0.565205
Target:  5'- -gGCCUGAUGAucgcugauuuCGAAGCGCCAcuuGCCa -3'
miRNA:   3'- uaUGGGCUACUuc--------GCUUUGCGGU---UGG- -5'
30733 5' -50.3 NC_006552.1 + 51854 0.74 0.565205
Target:  5'- -gGCCuuCGAgcAAGCGGAGCGCCAGCg -3'
miRNA:   3'- uaUGG--GCUacUUCGCUUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 27068 0.74 0.576354
Target:  5'- -gACCCGGUGggGUGAAGacguUGCgGACUc -3'
miRNA:   3'- uaUGGGCUACuuCGCUUU----GCGgUUGG- -5'
30733 5' -50.3 NC_006552.1 + 40322 0.74 0.587552
Target:  5'- aGUAgUCGAUGAAGCGGucuuCGCCGugUa -3'
miRNA:   3'- -UAUgGGCUACUUCGCUuu--GCGGUugG- -5'
30733 5' -50.3 NC_006552.1 + 50388 0.73 0.655221
Target:  5'- --uCCCGAcaUGAAcGCGAAACGCaaaGCCa -3'
miRNA:   3'- uauGGGCU--ACUU-CGCUUUGCGgu-UGG- -5'
30733 5' -50.3 NC_006552.1 + 59362 0.72 0.666483
Target:  5'- ---gCCGAUGGcAGCGAucGCGCgAGCCa -3'
miRNA:   3'- uaugGGCUACU-UCGCUu-UGCGgUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.