Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30733 | 5' | -50.3 | NC_006552.1 | + | 56767 | 0.66 | 0.959929 |
Target: 5'- uUGCCCG-UGAAGaguuCGAa--GCCAGCUa -3' miRNA: 3'- uAUGGGCuACUUC----GCUuugCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 1762 | 0.72 | 0.711077 |
Target: 5'- uGUACCUGGUG-GGCGAG--GCCAACg -3' miRNA: 3'- -UAUGGGCUACuUCGCUUugCGGUUGg -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 51245 | 0.71 | 0.722052 |
Target: 5'- ---gCCGAUG-AGCGccuGCGCCAGCUu -3' miRNA: 3'- uaugGGCUACuUCGCuu-UGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 24664 | 0.71 | 0.764884 |
Target: 5'- cGUACuuGAUGAcaaAGCGuugcAACGCCAcguCCu -3' miRNA: 3'- -UAUGggCUACU---UCGCu---UUGCGGUu--GG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 61642 | 0.71 | 0.764884 |
Target: 5'- gAUGCCCGAggccgccGGCcGGACGuCCAACCu -3' miRNA: 3'- -UAUGGGCUacu----UCGcUUUGC-GGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 11738 | 0.7 | 0.775264 |
Target: 5'- cUugCCGGUGAGGCcGGAGCGgCGAa- -3' miRNA: 3'- uAugGGCUACUUCG-CUUUGCgGUUgg -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 60308 | 0.7 | 0.775264 |
Target: 5'- -gGCCCcugGGUGuuccGCGAAAUGCUGACCc -3' miRNA: 3'- uaUGGG---CUACuu--CGCUUUGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 33764 | 0.7 | 0.815104 |
Target: 5'- cAUugCUGuUG-AGCaGAACGCCGGCCg -3' miRNA: 3'- -UAugGGCuACuUCGcUUUGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 49008 | 0.69 | 0.833855 |
Target: 5'- -aGCCCGgcGgcGCGAG-CGuUCAGCCg -3' miRNA: 3'- uaUGGGCuaCuuCGCUUuGC-GGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 25826 | 0.72 | 0.688895 |
Target: 5'- -cGCCCGcAUGAaccucGGCGAuGGCGCCAcuGCUg -3' miRNA: 3'- uaUGGGC-UACU-----UCGCU-UUGCGGU--UGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 5748 | 0.72 | 0.677712 |
Target: 5'- ---aCCGAUGAcGGCGAccagcACGCCGAUCa -3' miRNA: 3'- uaugGGCUACU-UCGCUu----UGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 50470 | 0.72 | 0.677712 |
Target: 5'- -gGCCCGAucUGggGCGGAcugauuaccGCGgaacaaCCAGCCa -3' miRNA: 3'- uaUGGGCU--ACuuCGCUU---------UGC------GGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 17482 | 0.78 | 0.371665 |
Target: 5'- gGUACCaCGGUGAAGCGAuucggAGCGUCcuuACCa -3' miRNA: 3'- -UAUGG-GCUACUUCGCU-----UUGCGGu--UGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 47705 | 0.76 | 0.468334 |
Target: 5'- -aGCCggaGGUGgcGCGuAACGCCGGCCa -3' miRNA: 3'- uaUGGg--CUACuuCGCuUUGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 10658 | 0.74 | 0.565205 |
Target: 5'- -gGCCUGAUGAucgcugauuuCGAAGCGCCAcuuGCCa -3' miRNA: 3'- uaUGGGCUACUuc--------GCUUUGCGGU---UGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 51854 | 0.74 | 0.565205 |
Target: 5'- -gGCCuuCGAgcAAGCGGAGCGCCAGCg -3' miRNA: 3'- uaUGG--GCUacUUCGCUUUGCGGUUGg -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 27068 | 0.74 | 0.576354 |
Target: 5'- -gACCCGGUGggGUGAAGacguUGCgGACUc -3' miRNA: 3'- uaUGGGCUACuuCGCUUU----GCGgUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 40322 | 0.74 | 0.587552 |
Target: 5'- aGUAgUCGAUGAAGCGGucuuCGCCGugUa -3' miRNA: 3'- -UAUgGGCUACUUCGCUuu--GCGGUugG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 50388 | 0.73 | 0.655221 |
Target: 5'- --uCCCGAcaUGAAcGCGAAACGCaaaGCCa -3' miRNA: 3'- uauGGGCU--ACUU-CGCUUUGCGgu-UGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 59362 | 0.72 | 0.666483 |
Target: 5'- ---gCCGAUGGcAGCGAucGCGCgAGCCa -3' miRNA: 3'- uaugGGCUACU-UCGCUu-UGCGgUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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