miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 5' -50.3 NC_006552.1 + 1762 0.72 0.711077
Target:  5'- uGUACCUGGUG-GGCGAG--GCCAACg -3'
miRNA:   3'- -UAUGGGCUACuUCGCUUugCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 2134 0.66 0.936654
Target:  5'- --cCCUGAUGAcuucaGGCcguGGCGCUGGCCa -3'
miRNA:   3'- uauGGGCUACU-----UCGcu-UUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 4371 0.66 0.955834
Target:  5'- uUugCCGAUGAca-GAAGCGUCAgugauguccuccACCa -3'
miRNA:   3'- uAugGGCUACUucgCUUUGCGGU------------UGG- -5'
30733 5' -50.3 NC_006552.1 + 5748 0.72 0.677712
Target:  5'- ---aCCGAUGAcGGCGAccagcACGCCGAUCa -3'
miRNA:   3'- uaugGGCUACU-UCGCUu----UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 6623 0.69 0.851713
Target:  5'- -gGCCCGAUacaucGAGCGGAGCcCCAGgCa -3'
miRNA:   3'- uaUGGGCUAc----UUCGCUUUGcGGUUgG- -5'
30733 5' -50.3 NC_006552.1 + 9401 0.69 0.860282
Target:  5'- -cGCCCcGUGcGGCGcgcuucAUGCCAGCCa -3'
miRNA:   3'- uaUGGGcUACuUCGCuu----UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 10658 0.74 0.565205
Target:  5'- -gGCCUGAUGAucgcugauuuCGAAGCGCCAcuuGCCa -3'
miRNA:   3'- uaUGGGCUACUuc--------GCUUUGCGGU---UGG- -5'
30733 5' -50.3 NC_006552.1 + 11738 0.7 0.775264
Target:  5'- cUugCCGGUGAGGCcGGAGCGgCGAa- -3'
miRNA:   3'- uAugGGCUACUUCG-CUUUGCgGUUgg -5'
30733 5' -50.3 NC_006552.1 + 14075 0.69 0.842901
Target:  5'- -cGCCCccuGUGuuGCGAuACGgCCGGCCg -3'
miRNA:   3'- uaUGGGc--UACuuCGCUuUGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 17482 0.78 0.371665
Target:  5'- gGUACCaCGGUGAAGCGAuucggAGCGUCcuuACCa -3'
miRNA:   3'- -UAUGG-GCUACUUCGCU-----UUGCGGu--UGG- -5'
30733 5' -50.3 NC_006552.1 + 18559 0.68 0.891975
Target:  5'- --uCCCGcgGAgaaccgAGuCGGuuCGCCAGCCa -3'
miRNA:   3'- uauGGGCuaCU------UC-GCUuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 21394 0.67 0.925337
Target:  5'- cGUGCcggCCGGUcAGGCGAAGCGUgAACg -3'
miRNA:   3'- -UAUG---GGCUAcUUCGCUUUGCGgUUGg -5'
30733 5' -50.3 NC_006552.1 + 24664 0.71 0.764884
Target:  5'- cGUACuuGAUGAcaaAGCGuugcAACGCCAcguCCu -3'
miRNA:   3'- -UAUGggCUACU---UCGCu---UUGCGGUu--GG- -5'
30733 5' -50.3 NC_006552.1 + 25826 0.72 0.688895
Target:  5'- -cGCCCGcAUGAaccucGGCGAuGGCGCCAcuGCUg -3'
miRNA:   3'- uaUGGGC-UACU-----UCGCU-UUGCGGU--UGG- -5'
30733 5' -50.3 NC_006552.1 + 25910 0.66 0.946813
Target:  5'- -cAUCCGGUGAuGCGuuggUGCCuACCa -3'
miRNA:   3'- uaUGGGCUACUuCGCuuu-GCGGuUGG- -5'
30733 5' -50.3 NC_006552.1 + 27068 0.74 0.576354
Target:  5'- -gACCCGGUGggGUGAAGacguUGCgGACUc -3'
miRNA:   3'- uaUGGGCUACuuCGCUUU----GCGgUUGG- -5'
30733 5' -50.3 NC_006552.1 + 28290 0.67 0.912855
Target:  5'- -gGCCCGAucgcguUGAAGUGGAucgacagagcCGCCAGgCCc -3'
miRNA:   3'- uaUGGGCU------ACUUCGCUUu---------GCGGUU-GG- -5'
30733 5' -50.3 NC_006552.1 + 28723 0.67 0.925337
Target:  5'- uGUugUCGAUcu-GCGGGAaGCCGGCCg -3'
miRNA:   3'- -UAugGGCUAcuuCGCUUUgCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 28979 0.66 0.946813
Target:  5'- -aACUCGgcGAAGCcuuGAGGCG-CGACCg -3'
miRNA:   3'- uaUGGGCuaCUUCG---CUUUGCgGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 29052 0.66 0.946813
Target:  5'- -aGCCUGGcggcuccaaGAAGCGcgugcCGCCGACCa -3'
miRNA:   3'- uaUGGGCUa--------CUUCGCuuu--GCGGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.