miRNA display CGI


Results 21 - 40 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 5' -50.3 NC_006552.1 + 32299 0.66 0.951464
Target:  5'- -cACCuCGAUGcGGCacacGGCGUCGGCCu -3'
miRNA:   3'- uaUGG-GCUACuUCGcu--UUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 33197 0.67 0.925337
Target:  5'- --gUCCaGGUGGAGUugcACGCCGGCCa -3'
miRNA:   3'- uauGGG-CUACUUCGcuuUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 33764 0.7 0.815104
Target:  5'- cAUugCUGuUG-AGCaGAACGCCGGCCg -3'
miRNA:   3'- -UAugGGCuACuUCGcUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 34962 0.66 0.941368
Target:  5'- cUACCC-AUGAucgggaaGGCGuu-CGCCGGCUg -3'
miRNA:   3'- uAUGGGcUACU-------UCGCuuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 35558 0.66 0.955834
Target:  5'- gAUGCUCGcgcgcucauAUGAcGGaCGGGACGCCAcCCa -3'
miRNA:   3'- -UAUGGGC---------UACU-UC-GCUUUGCGGUuGG- -5'
30733 5' -50.3 NC_006552.1 + 36071 0.66 0.951464
Target:  5'- uUGCCCuguUGGucgccaccAGcCGAAGCGCCGGCg -3'
miRNA:   3'- uAUGGGcu-ACU--------UC-GCUUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 36150 0.68 0.868601
Target:  5'- cUGCCUGAUc-GGCGGcaucGGCGCUGGCCu -3'
miRNA:   3'- uAUGGGCUAcuUCGCU----UUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 40322 0.74 0.587552
Target:  5'- aGUAgUCGAUGAAGCGGucuuCGCCGugUa -3'
miRNA:   3'- -UAUgGGCUACUUCGCUuu--GCGGUugG- -5'
30733 5' -50.3 NC_006552.1 + 44403 0.67 0.919241
Target:  5'- -aGCCCGgcGAuuGCGc--UGCCGGCCg -3'
miRNA:   3'- uaUGGGCuaCUu-CGCuuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 45073 0.67 0.931141
Target:  5'- --uUCCGGUGGucgGGCGAuugGUCAACCa -3'
miRNA:   3'- uauGGGCUACU---UCGCUuugCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 45387 0.66 0.955834
Target:  5'- -gGCCCGGgcucuuGCucGGCGCCGACg -3'
miRNA:   3'- uaUGGGCUacuu--CGcuUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 47705 0.76 0.468334
Target:  5'- -aGCCggaGGUGgcGCGuAACGCCGGCCa -3'
miRNA:   3'- uaUGGg--CUACuuCGCuUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 48293 1.1 0.003304
Target:  5'- gAUACCCGAUGAAGCGAAACGCCAACCc -3'
miRNA:   3'- -UAUGGGCUACUUCGCUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 49008 0.69 0.833855
Target:  5'- -aGCCCGgcGgcGCGAG-CGuUCAGCCg -3'
miRNA:   3'- uaUGGGCuaCuuCGCUUuGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 50388 0.73 0.655221
Target:  5'- --uCCCGAcaUGAAcGCGAAACGCaaaGCCa -3'
miRNA:   3'- uauGGGCU--ACUU-CGCUUUGCGgu-UGG- -5'
30733 5' -50.3 NC_006552.1 + 50470 0.72 0.677712
Target:  5'- -gGCCCGAucUGggGCGGAcugauuaccGCGgaacaaCCAGCCa -3'
miRNA:   3'- uaUGGGCU--ACuuCGCUU---------UGC------GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 51245 0.71 0.722052
Target:  5'- ---gCCGAUG-AGCGccuGCGCCAGCUu -3'
miRNA:   3'- uaugGGCUACuUCGCuu-UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 51543 0.66 0.955834
Target:  5'- -gACgCCGAggcGAAGCGGAucacCGCCGcACUg -3'
miRNA:   3'- uaUG-GGCUa--CUUCGCUUu---GCGGU-UGG- -5'
30733 5' -50.3 NC_006552.1 + 51854 0.74 0.565205
Target:  5'- -gGCCuuCGAgcAAGCGGAGCGCCAGCg -3'
miRNA:   3'- uaUGG--GCUacUUCGCUUUGCGGUUGg -5'
30733 5' -50.3 NC_006552.1 + 53080 0.67 0.919241
Target:  5'- uUGCCCaGUGAAGacccgUGCCAGCCc -3'
miRNA:   3'- uAUGGGcUACUUCgcuuuGCGGUUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.