Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30733 | 5' | -50.3 | NC_006552.1 | + | 14075 | 0.69 | 0.842901 |
Target: 5'- -cGCCCccuGUGuuGCGAuACGgCCGGCCg -3' miRNA: 3'- uaUGGGc--UACuuCGCUuUGC-GGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 6623 | 0.69 | 0.851713 |
Target: 5'- -gGCCCGAUacaucGAGCGGAGCcCCAGgCa -3' miRNA: 3'- uaUGGGCUAc----UUCGCUUUGcGGUUgG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 9401 | 0.69 | 0.860282 |
Target: 5'- -cGCCCcGUGcGGCGcgcuucAUGCCAGCCa -3' miRNA: 3'- uaUGGGcUACuUCGCuu----UGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 36150 | 0.68 | 0.868601 |
Target: 5'- cUGCCUGAUc-GGCGGcaucGGCGCUGGCCu -3' miRNA: 3'- uAUGGGCUAcuUCGCU----UUGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 53512 | 0.68 | 0.87666 |
Target: 5'- -gACCUGGUGGAggcucaccgcGCGAugccgGACGCCcaAGCCu -3' miRNA: 3'- uaUGGGCUACUU----------CGCU-----UUGCGG--UUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 18559 | 0.68 | 0.891975 |
Target: 5'- --uCCCGcgGAgaaccgAGuCGGuuCGCCAGCCa -3' miRNA: 3'- uauGGGCuaCU------UC-GCUuuGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 57243 | 0.68 | 0.899219 |
Target: 5'- -gGCaCCGccucGAGCGGAACGCCcucGCCg -3' miRNA: 3'- uaUG-GGCuac-UUCGCUUUGCGGu--UGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 28290 | 0.67 | 0.912855 |
Target: 5'- -gGCCCGAucgcguUGAAGUGGAucgacagagcCGCCAGgCCc -3' miRNA: 3'- uaUGGGCU------ACUUCGCUUu---------GCGGUU-GG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 44403 | 0.67 | 0.919241 |
Target: 5'- -aGCCCGgcGAuuGCGc--UGCCGGCCg -3' miRNA: 3'- uaUGGGCuaCUu-CGCuuuGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 53080 | 0.67 | 0.919241 |
Target: 5'- uUGCCCaGUGAAGacccgUGCCAGCCc -3' miRNA: 3'- uAUGGGcUACUUCgcuuuGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 28723 | 0.67 | 0.925337 |
Target: 5'- uGUugUCGAUcu-GCGGGAaGCCGGCCg -3' miRNA: 3'- -UAugGGCUAcuuCGCUUUgCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 60839 | 0.67 | 0.925337 |
Target: 5'- -aGCCCGGcgaucgguugUGGGugcGCGAGACGUgGACUg -3' miRNA: 3'- uaUGGGCU----------ACUU---CGCUUUGCGgUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 21394 | 0.67 | 0.925337 |
Target: 5'- cGUGCcggCCGGUcAGGCGAAGCGUgAACg -3' miRNA: 3'- -UAUG---GGCUAcUUCGCUUUGCGgUUGg -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 33197 | 0.67 | 0.925337 |
Target: 5'- --gUCCaGGUGGAGUugcACGCCGGCCa -3' miRNA: 3'- uauGGG-CUACUUCGcuuUGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 60135 | 0.67 | 0.927694 |
Target: 5'- -aACCC-AUGGuGGCGGGAgaaagugcggcagauCGCCGGCCa -3' miRNA: 3'- uaUGGGcUACU-UCGCUUU---------------GCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 45073 | 0.67 | 0.931141 |
Target: 5'- --uUCCGGUGGucgGGCGAuugGUCAACCa -3' miRNA: 3'- uauGGGCUACU---UCGCUuugCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 2134 | 0.66 | 0.936654 |
Target: 5'- --cCCUGAUGAcuucaGGCcguGGCGCUGGCCa -3' miRNA: 3'- uauGGGCUACU-----UCGcu-UUGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 34962 | 0.66 | 0.941368 |
Target: 5'- cUACCC-AUGAucgggaaGGCGuu-CGCCGGCUg -3' miRNA: 3'- uAUGGGcUACU-------UCGCuuuGCGGUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 58395 | 0.66 | 0.941877 |
Target: 5'- -gGCUaCGGUGAGcGCGAAGgGCagCAACCg -3' miRNA: 3'- uaUGG-GCUACUU-CGCUUUgCG--GUUGG- -5' |
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30733 | 5' | -50.3 | NC_006552.1 | + | 61415 | 0.66 | 0.941877 |
Target: 5'- -aACCuCGAcGAAGcCGAGACGUUcACCc -3' miRNA: 3'- uaUGG-GCUaCUUC-GCUUUGCGGuUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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