miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30733 5' -50.3 NC_006552.1 + 33197 0.67 0.925337
Target:  5'- --gUCCaGGUGGAGUugcACGCCGGCCa -3'
miRNA:   3'- uauGGG-CUACUUCGcuuUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 60839 0.67 0.925337
Target:  5'- -aGCCCGGcgaucgguugUGGGugcGCGAGACGUgGACUg -3'
miRNA:   3'- uaUGGGCU----------ACUU---CGCUUUGCGgUUGG- -5'
30733 5' -50.3 NC_006552.1 + 21394 0.67 0.925337
Target:  5'- cGUGCcggCCGGUcAGGCGAAGCGUgAACg -3'
miRNA:   3'- -UAUG---GGCUAcUUCGCUUUGCGgUUGg -5'
30733 5' -50.3 NC_006552.1 + 28723 0.67 0.925337
Target:  5'- uGUugUCGAUcu-GCGGGAaGCCGGCCg -3'
miRNA:   3'- -UAugGGCUAcuuCGCUUUgCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 53080 0.67 0.919241
Target:  5'- uUGCCCaGUGAAGacccgUGCCAGCCc -3'
miRNA:   3'- uAUGGGcUACUUCgcuuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 44403 0.67 0.919241
Target:  5'- -aGCCCGgcGAuuGCGc--UGCCGGCCg -3'
miRNA:   3'- uaUGGGCuaCUu-CGCuuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 28290 0.67 0.912855
Target:  5'- -gGCCCGAucgcguUGAAGUGGAucgacagagcCGCCAGgCCc -3'
miRNA:   3'- uaUGGGCU------ACUUCGCUUu---------GCGGUU-GG- -5'
30733 5' -50.3 NC_006552.1 + 57243 0.68 0.899219
Target:  5'- -gGCaCCGccucGAGCGGAACGCCcucGCCg -3'
miRNA:   3'- uaUG-GGCuac-UUCGCUUUGCGGu--UGG- -5'
30733 5' -50.3 NC_006552.1 + 18559 0.68 0.891975
Target:  5'- --uCCCGcgGAgaaccgAGuCGGuuCGCCAGCCa -3'
miRNA:   3'- uauGGGCuaCU------UC-GCUuuGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 53512 0.68 0.87666
Target:  5'- -gACCUGGUGGAggcucaccgcGCGAugccgGACGCCcaAGCCu -3'
miRNA:   3'- uaUGGGCUACUU----------CGCU-----UUGCGG--UUGG- -5'
30733 5' -50.3 NC_006552.1 + 36150 0.68 0.868601
Target:  5'- cUGCCUGAUc-GGCGGcaucGGCGCUGGCCu -3'
miRNA:   3'- uAUGGGCUAcuUCGCU----UUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 9401 0.69 0.860282
Target:  5'- -cGCCCcGUGcGGCGcgcuucAUGCCAGCCa -3'
miRNA:   3'- uaUGGGcUACuUCGCuu----UGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 6623 0.69 0.851713
Target:  5'- -gGCCCGAUacaucGAGCGGAGCcCCAGgCa -3'
miRNA:   3'- uaUGGGCUAc----UUCGCUUUGcGGUUgG- -5'
30733 5' -50.3 NC_006552.1 + 14075 0.69 0.842901
Target:  5'- -cGCCCccuGUGuuGCGAuACGgCCGGCCg -3'
miRNA:   3'- uaUGGGc--UACuuCGCUuUGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 49008 0.69 0.833855
Target:  5'- -aGCCCGgcGgcGCGAG-CGuUCAGCCg -3'
miRNA:   3'- uaUGGGCuaCuuCGCUUuGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 33764 0.7 0.815104
Target:  5'- cAUugCUGuUG-AGCaGAACGCCGGCCg -3'
miRNA:   3'- -UAugGGCuACuUCGcUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 11738 0.7 0.775264
Target:  5'- cUugCCGGUGAGGCcGGAGCGgCGAa- -3'
miRNA:   3'- uAugGGCUACUUCG-CUUUGCgGUUgg -5'
30733 5' -50.3 NC_006552.1 + 60308 0.7 0.775264
Target:  5'- -gGCCCcugGGUGuuccGCGAAAUGCUGACCc -3'
miRNA:   3'- uaUGGG---CUACuu--CGCUUUGCGGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 61642 0.71 0.764884
Target:  5'- gAUGCCCGAggccgccGGCcGGACGuCCAACCu -3'
miRNA:   3'- -UAUGGGCUacu----UCGcUUUGC-GGUUGG- -5'
30733 5' -50.3 NC_006552.1 + 24664 0.71 0.764884
Target:  5'- cGUACuuGAUGAcaaAGCGuugcAACGCCAcguCCu -3'
miRNA:   3'- -UAUGggCUACU---UCGCu---UUGCGGUu--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.