miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30744 5' -56.1 NC_006552.1 + 3234 0.66 0.733689
Target:  5'- gGCUCGGCuggaaggaucGcCGCAguGCGCCGG-AGGUCGu -3'
miRNA:   3'- -CGAGCUG----------C-GCGU--CGUGGUCgUUCAGC- -5'
30744 5' -56.1 NC_006552.1 + 57857 0.66 0.723272
Target:  5'- aGCUCGAUGgcagugugGCGGCACCAGgGaacacguuccAGUCc -3'
miRNA:   3'- -CGAGCUGCg-------CGUCGUGGUCgU----------UCAGc -5'
30744 5' -56.1 NC_006552.1 + 32702 0.66 0.722225
Target:  5'- cGC-CGGCcgGCGCGGgGCCGGUggagcgcucgaacAGGUCGc -3'
miRNA:   3'- -CGaGCUG--CGCGUCgUGGUCG-------------UUCAGC- -5'
30744 5' -56.1 NC_006552.1 + 65084 0.66 0.712767
Target:  5'- cCUgGACGcCGcCGGCGCCGGCAAa--- -3'
miRNA:   3'- cGAgCUGC-GC-GUCGUGGUCGUUcagc -5'
30744 5' -56.1 NC_006552.1 + 12364 0.66 0.691538
Target:  5'- gGCgucgCGGCGCGCuucuGCaacgGCCuGCGcGUCGg -3'
miRNA:   3'- -CGa---GCUGCGCGu---CG----UGGuCGUuCAGC- -5'
30744 5' -56.1 NC_006552.1 + 740 0.66 0.691538
Target:  5'- --gCGACGUGCAGCGcuccCCGGCGc-UCGa -3'
miRNA:   3'- cgaGCUGCGCGUCGU----GGUCGUucAGC- -5'
30744 5' -56.1 NC_006552.1 + 21154 0.66 0.691538
Target:  5'- gGCggCGACGCGauaGGCGcauCCGGCcgcGUCGg -3'
miRNA:   3'- -CGa-GCUGCGCg--UCGU---GGUCGuu-CAGC- -5'
30744 5' -56.1 NC_006552.1 + 45037 0.67 0.685123
Target:  5'- aGUUCGAUGCGguGUucuccuGCUGGCGugccugcguuccgguGGUCGg -3'
miRNA:   3'- -CGAGCUGCGCguCG------UGGUCGU---------------UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 25013 0.67 0.680835
Target:  5'- cGCUCGACaGCgGCGGCAucgUCGGCGgagAGUUc -3'
miRNA:   3'- -CGAGCUG-CG-CGUCGU---GGUCGU---UCAGc -5'
30744 5' -56.1 NC_006552.1 + 3581 0.67 0.680835
Target:  5'- gGC-CGAgcCGC-CGGCGCCGGCAGGa-- -3'
miRNA:   3'- -CGaGCU--GCGcGUCGUGGUCGUUCagc -5'
30744 5' -56.1 NC_006552.1 + 5608 0.67 0.670088
Target:  5'- gGCUgaCGGucaGCGCGGCaACCAGCAcgcGGUUa -3'
miRNA:   3'- -CGA--GCUg--CGCGUCG-UGGUCGU---UCAGc -5'
30744 5' -56.1 NC_006552.1 + 5675 0.67 0.666856
Target:  5'- cCUCGAUGCggGCAGCGCUcucggcugauucgcGGC-GGUCGc -3'
miRNA:   3'- cGAGCUGCG--CGUCGUGG--------------UCGuUCAGC- -5'
30744 5' -56.1 NC_006552.1 + 38522 0.67 0.659306
Target:  5'- cGCUCGAUggugGCGCGGUugUccugaAGCAucuggaaaugcuGGUCGg -3'
miRNA:   3'- -CGAGCUG----CGCGUCGugG-----UCGU------------UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 15725 0.67 0.648499
Target:  5'- cGCUCaccGACGCGCuGCauguaGCCGGCAuccGG-CGg -3'
miRNA:   3'- -CGAG---CUGCGCGuCG-----UGGUCGU---UCaGC- -5'
30744 5' -56.1 NC_006552.1 + 23927 0.67 0.638761
Target:  5'- uCUCGAUGCGCcccugauucuuugcuGCGCCAGCGAc--- -3'
miRNA:   3'- cGAGCUGCGCGu--------------CGUGGUCGUUcagc -5'
30744 5' -56.1 NC_006552.1 + 20684 0.67 0.637678
Target:  5'- uGCUCGAUG---GGCGCCGGCA-GUCc -3'
miRNA:   3'- -CGAGCUGCgcgUCGUGGUCGUuCAGc -5'
30744 5' -56.1 NC_006552.1 + 56812 0.67 0.637678
Target:  5'- cGCUCGA-GCGC-GC-CCGGCGgauGGUUGu -3'
miRNA:   3'- -CGAGCUgCGCGuCGuGGUCGU---UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 31988 0.67 0.63443
Target:  5'- uGCUCGGCgugaaucuccggcuGCGCGGUguccuugucgGCCAGCGccauGUCa -3'
miRNA:   3'- -CGAGCUG--------------CGCGUCG----------UGGUCGUu---CAGc -5'
30744 5' -56.1 NC_006552.1 + 7181 0.67 0.626852
Target:  5'- uGCUCGagcaucacccaaGCGCGUcccguccccGGCGCgCAGCGAGcCGc -3'
miRNA:   3'- -CGAGC------------UGCGCG---------UCGUG-GUCGUUCaGC- -5'
30744 5' -56.1 NC_006552.1 + 25325 0.68 0.616031
Target:  5'- aGCUgGGCGgGUAGCGCUGGUGuaacccucGGUCa -3'
miRNA:   3'- -CGAgCUGCgCGUCGUGGUCGU--------UCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.