miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30744 5' -56.1 NC_006552.1 + 65084 0.66 0.712767
Target:  5'- cCUgGACGcCGcCGGCGCCGGCAAa--- -3'
miRNA:   3'- cGAgCUGC-GC-GUCGUGGUCGUUcagc -5'
30744 5' -56.1 NC_006552.1 + 62590 0.69 0.551684
Target:  5'- gGCUCGACaagggcgccgaGCGCGGCACguGgguuGAGUCu -3'
miRNA:   3'- -CGAGCUG-----------CGCGUCGUGguCg---UUCAGc -5'
30744 5' -56.1 NC_006552.1 + 59285 0.7 0.479467
Target:  5'- -aUCGAC-CGCGGCGCUgacGGCAAGcCGu -3'
miRNA:   3'- cgAGCUGcGCGUCGUGG---UCGUUCaGC- -5'
30744 5' -56.1 NC_006552.1 + 59085 0.7 0.499668
Target:  5'- cGUUCcuGAUGCGCuaucacAGCACCGGC-GGUCa -3'
miRNA:   3'- -CGAG--CUGCGCG------UCGUGGUCGuUCAGc -5'
30744 5' -56.1 NC_006552.1 + 57857 0.66 0.723272
Target:  5'- aGCUCGAUGgcagugugGCGGCACCAGgGaacacguuccAGUCc -3'
miRNA:   3'- -CGAGCUGCg-------CGUCGUGGUCgU----------UCAGc -5'
30744 5' -56.1 NC_006552.1 + 56812 0.67 0.637678
Target:  5'- cGCUCGA-GCGC-GC-CCGGCGgauGGUUGu -3'
miRNA:   3'- -CGAGCUgCGCGuCGuGGUCGU---UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 52002 0.7 0.479467
Target:  5'- aGCUUGcCGCgGC-GCGCCAGCAAcUCGc -3'
miRNA:   3'- -CGAGCuGCG-CGuCGUGGUCGUUcAGC- -5'
30744 5' -56.1 NC_006552.1 + 51857 0.69 0.541132
Target:  5'- cUUCGAgcaaGCGgAGCGCCAGCGgcaggAGUUGg -3'
miRNA:   3'- cGAGCUg---CGCgUCGUGGUCGU-----UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 50098 0.7 0.499668
Target:  5'- cGCgggCGgaACGCGCAGCACggCGGCGcGUUGa -3'
miRNA:   3'- -CGa--GC--UGCGCGUCGUG--GUCGUuCAGC- -5'
30744 5' -56.1 NC_006552.1 + 46418 0.68 0.572967
Target:  5'- gGCUUGGCGC-CAcCACCcagagugcGGCAAGUCa -3'
miRNA:   3'- -CGAGCUGCGcGUcGUGG--------UCGUUCAGc -5'
30744 5' -56.1 NC_006552.1 + 45037 0.67 0.685123
Target:  5'- aGUUCGAUGCGguGUucuccuGCUGGCGugccugcguuccgguGGUCGg -3'
miRNA:   3'- -CGAGCUGCGCguCG------UGGUCGU---------------UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 44208 0.71 0.403062
Target:  5'- cGCUCGugGCGCagguGGCgAUCAcGCA-GUCGg -3'
miRNA:   3'- -CGAGCugCGCG----UCG-UGGU-CGUuCAGC- -5'
30744 5' -56.1 NC_006552.1 + 43928 0.68 0.616031
Target:  5'- aGCUCcGCGCGCAcuuuuGCGCCAGCc----- -3'
miRNA:   3'- -CGAGcUGCGCGU-----CGUGGUCGuucagc -5'
30744 5' -56.1 NC_006552.1 + 42751 1.11 0.000795
Target:  5'- cGCUCGACGCGCAGCACCAGCAAGUCGu -3'
miRNA:   3'- -CGAGCUGCGCGUCGUGGUCGUUCAGC- -5'
30744 5' -56.1 NC_006552.1 + 41972 0.69 0.551684
Target:  5'- uGCUCGAagcCGUgGCAGUACCGGCAGc--- -3'
miRNA:   3'- -CGAGCU---GCG-CGUCGUGGUCGUUcagc -5'
30744 5' -56.1 NC_006552.1 + 38522 0.67 0.659306
Target:  5'- cGCUCGAUggugGCGCGGUugUccugaAGCAucuggaaaugcuGGUCGg -3'
miRNA:   3'- -CGAGCUG----CGCGUCGugG-----UCGU------------UCAGC- -5'
30744 5' -56.1 NC_006552.1 + 34664 0.68 0.572967
Target:  5'- uGgUCGGCGCcuugacGCGGUugACCAGCAuGUCa -3'
miRNA:   3'- -CgAGCUGCG------CGUCG--UGGUCGUuCAGc -5'
30744 5' -56.1 NC_006552.1 + 34373 0.73 0.326918
Target:  5'- cGUUCGACGCGC-GCGCCAGUGcAG-Ca -3'
miRNA:   3'- -CGAGCUGCGCGuCGUGGUCGU-UCaGc -5'
30744 5' -56.1 NC_006552.1 + 33539 0.68 0.594437
Target:  5'- uGCgcaGGCGCGCAGCgGCCgacagcAGCAGGcCa -3'
miRNA:   3'- -CGag-CUGCGCGUCG-UGG------UCGUUCaGc -5'
30744 5' -56.1 NC_006552.1 + 33067 0.68 0.561234
Target:  5'- aCUCGGCGUagggaacGCAGCACgGGUgcGUCu -3'
miRNA:   3'- cGAGCUGCG-------CGUCGUGgUCGuuCAGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.