miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30747 3' -61.6 NC_006552.1 + 65014 0.66 0.408927
Target:  5'- cCCAa--AGgGCGCaAGUUUGGCCGCg -3'
miRNA:   3'- cGGUccgUCgCGCGgUCAAGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 64159 0.67 0.391501
Target:  5'- cGCCcuGGCGcacGCGcCGaCCAGUUCGGCa-- -3'
miRNA:   3'- -CGGu-CCGU---CGC-GC-GGUCAAGCCGgcg -5'
30747 3' -61.6 NC_006552.1 + 63795 0.66 0.408927
Target:  5'- cGCCAucacCGGUGCGCUAGcUUCGG-CGCc -3'
miRNA:   3'- -CGGUcc--GUCGCGCGGUC-AAGCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 62141 0.66 0.426829
Target:  5'- cGCCaAGGUGGC-CGaCCAGaUCcuGCCGCa -3'
miRNA:   3'- -CGG-UCCGUCGcGC-GGUCaAGc-CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 61876 0.67 0.391501
Target:  5'- cCCAGGCuGaauuGCGCCGGcugCGGaCGCu -3'
miRNA:   3'- cGGUCCGuCg---CGCGGUCaa-GCCgGCG- -5'
30747 3' -61.6 NC_006552.1 + 61373 0.79 0.057231
Target:  5'- aGCCGGGCcauguuuuGGCGCGCCGG--CGGCgGCu -3'
miRNA:   3'- -CGGUCCG--------UCGCGCGGUCaaGCCGgCG- -5'
30747 3' -61.6 NC_006552.1 + 61184 0.68 0.311926
Target:  5'- cGCUcGGCaAGCcuGCGCCGauaUCGGCUGCu -3'
miRNA:   3'- -CGGuCCG-UCG--CGCGGUca-AGCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 58912 0.67 0.391501
Target:  5'- cUCGGGCAGCcagcaGCGCCuuGUaaCGGCCaGCc -3'
miRNA:   3'- cGGUCCGUCG-----CGCGGu-CAa-GCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 58628 0.68 0.326053
Target:  5'- cGCCGGGCAGacugaacCGCGaCCGGgcgaCGaGCCGa -3'
miRNA:   3'- -CGGUCCGUC-------GCGC-GGUCaa--GC-CGGCg -5'
30747 3' -61.6 NC_006552.1 + 58407 0.67 0.400153
Target:  5'- cGCgaaGGGCAGCaaccgcgaGUGCCAGgccUCGaucaGCCGCu -3'
miRNA:   3'- -CGg--UCCGUCG--------CGCGGUCa--AGC----CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 56267 0.69 0.27699
Target:  5'- aGCCaAGGcCGGCGUccGCCAGUUC-GCCa- -3'
miRNA:   3'- -CGG-UCC-GUCGCG--CGGUCAAGcCGGcg -5'
30747 3' -61.6 NC_006552.1 + 55928 0.66 0.454532
Target:  5'- cGCCGgagaucccGGCGGacaaGCGCaccuucaacCAGUUCcGCCGCu -3'
miRNA:   3'- -CGGU--------CCGUCg---CGCG---------GUCAAGcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 53994 0.71 0.200797
Target:  5'- gGCCAGGC-GCGUgGCCcuGGcccUGGCCGCg -3'
miRNA:   3'- -CGGUCCGuCGCG-CGG--UCaa-GCCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 53583 0.68 0.319303
Target:  5'- aGUCGauGUGGCGCcgGCCAGUUCGguGCCGCc -3'
miRNA:   3'- -CGGUc-CGUCGCG--CGGUCAAGC--CGGCG- -5'
30747 3' -61.6 NC_006552.1 + 51989 0.7 0.253819
Target:  5'- cGCCAGcagcgagagcuugccGCGGCGCGCCAGcaacUC-GCCGa -3'
miRNA:   3'- -CGGUC---------------CGUCGCGCGGUCa---AGcCGGCg -5'
30747 3' -61.6 NC_006552.1 + 50303 0.66 0.454532
Target:  5'- cGCCGGGCgcucaccgaAGuUGCGUCGGcaaUCGGCgUGCu -3'
miRNA:   3'- -CGGUCCG---------UC-GCGCGGUCa--AGCCG-GCG- -5'
30747 3' -61.6 NC_006552.1 + 50165 0.7 0.239273
Target:  5'- -gCAGGCGuacuGCGCGCUGGUcggcuaUCuGCCGCa -3'
miRNA:   3'- cgGUCCGU----CGCGCGGUCA------AGcCGGCG- -5'
30747 3' -61.6 NC_006552.1 + 49008 0.7 0.233421
Target:  5'- aGCCcGGCGGCGCGagcGUUCaGCCGa -3'
miRNA:   3'- -CGGuCCGUCGCGCgguCAAGcCGGCg -5'
30747 3' -61.6 NC_006552.1 + 47705 0.68 0.350109
Target:  5'- aGCCggAGGUGGCGCGUaacgcCGGCCaGCa -3'
miRNA:   3'- -CGG--UCCGUCGCGCGgucaaGCCGG-CG- -5'
30747 3' -61.6 NC_006552.1 + 44054 0.66 0.416925
Target:  5'- uCCAGGUagaucggccgcccGGCGCGCUuccucUUCGccGCCGCg -3'
miRNA:   3'- cGGUCCG-------------UCGCGCGGuc---AAGC--CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.