Results 1 - 20 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30772 | 5' | -57.2 | NC_006552.1 | + | 26043 | 1.14 | 0.000344 |
Target: 5'- aCCUGGCCCACCCAAAUGCCGCCAUCCa -3' miRNA: 3'- -GGACCGGGUGGGUUUACGGCGGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 14160 | 0.79 | 0.126084 |
Target: 5'- cCCgGGacauCCACCCAGGUGUCGCCuUCCu -3' miRNA: 3'- -GGaCCg---GGUGGGUUUACGGCGGuAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 54008 | 0.78 | 0.140513 |
Target: 5'- cCCUGGCCCugGCCgCGA--GCCGCCA-CCg -3' miRNA: 3'- -GGACCGGG--UGG-GUUuaCGGCGGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 63024 | 0.77 | 0.165003 |
Target: 5'- -aUGG-CCGCCCAGcgcaaccugGCCGCCAUCCu -3' miRNA: 3'- ggACCgGGUGGGUUua-------CGGCGGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 39526 | 0.76 | 0.183398 |
Target: 5'- uCCUGG-CCGCCCAc--GUCGCCGUUCg -3' miRNA: 3'- -GGACCgGGUGGGUuuaCGGCGGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 1627 | 0.75 | 0.208382 |
Target: 5'- uCC-GGCCCACCCGAcUGCCGgagauucCCAugUCCu -3' miRNA: 3'- -GGaCCGGGUGGGUUuACGGC-------GGU--AGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 39191 | 0.74 | 0.237452 |
Target: 5'- gCUGGcCCCACCau-GUGCUGCCGUa- -3' miRNA: 3'- gGACC-GGGUGGguuUACGGCGGUAgg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 22577 | 0.74 | 0.243535 |
Target: 5'- uCCUGGCCCGuCUCGuaGAUGCUGgCGUaCCg -3' miRNA: 3'- -GGACCGGGU-GGGU--UUACGGCgGUA-GG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 61688 | 0.73 | 0.289797 |
Target: 5'- aCCUGG-CCGCUCGAccacGCCGgCAUCCu -3' miRNA: 3'- -GGACCgGGUGGGUUua--CGGCgGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 26283 | 0.73 | 0.282787 |
Target: 5'- aCCgUGGCCgCGCCCAGcggGUaGUCGCCggCCa -3' miRNA: 3'- -GG-ACCGG-GUGGGUU---UA-CGGCGGuaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 16372 | 0.73 | 0.275913 |
Target: 5'- gCCgccGGCCCGCCCAua----GCCAUCCc -3' miRNA: 3'- -GGa--CCGGGUGGGUuuacggCGGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 36273 | 0.73 | 0.275913 |
Target: 5'- uCCUGGCagCCugUuCAGGUGUCGgCCGUCCg -3' miRNA: 3'- -GGACCG--GGugG-GUUUACGGC-GGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 27713 | 0.72 | 0.326884 |
Target: 5'- gCUUGGCCUGCUCGGGUGCCuCCuucaCCg -3' miRNA: 3'- -GGACCGGGUGGGUUUACGGcGGua--GG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 34165 | 0.72 | 0.342675 |
Target: 5'- gCCUGG-CCGCCCAGcagcagGgCGCgGUCCa -3' miRNA: 3'- -GGACCgGGUGGGUUua----CgGCGgUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 27841 | 0.71 | 0.392392 |
Target: 5'- gCUGGCaggccguagccguCCACCUuGAUGCCGgCGUCg -3' miRNA: 3'- gGACCG-------------GGUGGGuUUACGGCgGUAGg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 18300 | 0.71 | 0.379314 |
Target: 5'- aCCUGGCCuCGCCCGGGcgcagcacuggaacuUGgCGCCG-CUg -3' miRNA: 3'- -GGACCGG-GUGGGUUU---------------ACgGCGGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 21787 | 0.71 | 0.359008 |
Target: 5'- --cGGUCCAagCCug--GCCGCCGUCCu -3' miRNA: 3'- ggaCCGGGUg-GGuuuaCGGCGGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 45216 | 0.7 | 0.417572 |
Target: 5'- gCCUGGCCCACacgaucgaucagcuUCGAAagcuUGCCGgCAaCCg -3' miRNA: 3'- -GGACCGGGUG--------------GGUUU----ACGGCgGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 25399 | 0.7 | 0.429593 |
Target: 5'- --cGGUCCAgUuagcagCAGGUGCUGCCGUCCc -3' miRNA: 3'- ggaCCGGGUgG------GUUUACGGCGGUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 63058 | 0.7 | 0.447522 |
Target: 5'- aCCU-GUUCGCCCAGGUGCugggcauggccaaCGCCGUCg -3' miRNA: 3'- -GGAcCGGGUGGGUUUACG-------------GCGGUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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