miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 5' -57.2 NC_006552.1 + 61050 0.67 0.600818
Target:  5'- --cGGCCgagCAUCCAuAUGCCGCguugggccucccgCAUCCu -3'
miRNA:   3'- ggaCCGG---GUGGGUuUACGGCG-------------GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 52141 0.67 0.594418
Target:  5'- -gUGGCgCGCCCGcgucguuGAUaaaaccgcgcucaucGCCGCCAUCg -3'
miRNA:   3'- ggACCGgGUGGGU-------UUA---------------CGGCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 23237 0.67 0.591222
Target:  5'- aCCUGGaCCgGCUCAc--GCCGCCGa-- -3'
miRNA:   3'- -GGACC-GGgUGGGUuuaCGGCGGUagg -5'
30772 5' -57.2 NC_006552.1 + 22052 0.67 0.591222
Target:  5'- gCCUGGCCagugCugUCGcuGAUGCgCGCggCAUCCa -3'
miRNA:   3'- -GGACCGG----GugGGU--UUACG-GCG--GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 52194 0.68 0.570001
Target:  5'- gCCUGGCCa--CCGAGgacuUGCuCGUCGUCg -3'
miRNA:   3'- -GGACCGGgugGGUUU----ACG-GCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 19188 0.68 0.570001
Target:  5'- cCCcGaGCCC-CCCAAGUGCuuccuCGCCGaucgcuUCCg -3'
miRNA:   3'- -GGaC-CGGGuGGGUUUACG-----GCGGU------AGG- -5'
30772 5' -57.2 NC_006552.1 + 53189 0.68 0.548971
Target:  5'- gCUGGgaaaUCACCCccgAAAUGaCCGCgAUCCa -3'
miRNA:   3'- gGACCg---GGUGGG---UUUAC-GGCGgUAGG- -5'
30772 5' -57.2 NC_006552.1 + 28042 0.68 0.548971
Target:  5'- uCUUGGUcaCCACCagcuUGUCGCCcAUCCu -3'
miRNA:   3'- -GGACCG--GGUGGguuuACGGCGG-UAGG- -5'
30772 5' -57.2 NC_006552.1 + 9379 0.68 0.544793
Target:  5'- gCCUGGCCacugccgcgcacguCGCCCcGugcggcgcgcuucAUGCCaGCCAUCg -3'
miRNA:   3'- -GGACCGG--------------GUGGGuU-------------UACGG-CGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 24522 0.68 0.538545
Target:  5'- uCCaGGCgcugaCGCCCAua-GCCGCCGaCCa -3'
miRNA:   3'- -GGaCCGg----GUGGGUuuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 6196 0.68 0.538545
Target:  5'- cCCUGGUCUuuCUCGaaGAUGCCgGCCGcCCa -3'
miRNA:   3'- -GGACCGGGu-GGGU--UUACGG-CGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 41309 0.68 0.528188
Target:  5'- gCUGucGCCUuCCUcGAUGCUGCCGUCa -3'
miRNA:   3'- gGAC--CGGGuGGGuUUACGGCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 11592 0.68 0.517906
Target:  5'- cCCagGGCCUGCaCCAGuucGCCGCCGaacucgCCa -3'
miRNA:   3'- -GGa-CCGGGUG-GGUUua-CGGCGGUa-----GG- -5'
30772 5' -57.2 NC_006552.1 + 17756 0.68 0.517906
Target:  5'- --aGGCCgugucguuauuCGCCCGAGUGCuCGCCAg-- -3'
miRNA:   3'- ggaCCGG-----------GUGGGUUUACG-GCGGUagg -5'
30772 5' -57.2 NC_006552.1 + 51177 0.69 0.49759
Target:  5'- --aGGCCCGCgCCAAAgcGCCaGUCGUCa -3'
miRNA:   3'- ggaCCGGGUG-GGUUUa-CGG-CGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 61637 0.69 0.467811
Target:  5'- aUCUGGa-UGCCCGAG-GCCGCCggCCg -3'
miRNA:   3'- -GGACCggGUGGGUUUaCGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 29053 0.69 0.466834
Target:  5'- gCCUGG-CgGCuCCAAgaagcgcGUGCCGCCGaCCa -3'
miRNA:   3'- -GGACCgGgUG-GGUU-------UACGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 53590 0.7 0.448477
Target:  5'- -gUGGCgCCGgCCAGuucgGUGCCGCCggCUg -3'
miRNA:   3'- ggACCG-GGUgGGUU----UACGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 4497 0.7 0.448477
Target:  5'- --aGGCgCACCgAGcgGCUGCCAgCCa -3'
miRNA:   3'- ggaCCGgGUGGgUUuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 63058 0.7 0.447522
Target:  5'- aCCU-GUUCGCCCAGGUGCugggcauggccaaCGCCGUCg -3'
miRNA:   3'- -GGAcCGGGUGGGUUUACG-------------GCGGUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.