Results 1 - 20 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30806 | 5' | -62.2 | NC_006552.1 | + | 5799 | 1.11 | 0.000171 |
Target: 5'- aAGCCAGCCCAACGCGCCCGCAAGGGCg -3' miRNA: 3'- -UCGGUCGGGUUGCGCGGGCGUUCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 41420 | 0.77 | 0.063947 |
Target: 5'- cGCCAGUUCGGCcGCGUCCGUggGGaGCg -3' miRNA: 3'- uCGGUCGGGUUG-CGCGGGCGuuCC-CG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 13928 | 0.76 | 0.075413 |
Target: 5'- uGCguGCCaCGACaGCGCCCGCGucgcGGGCc -3' miRNA: 3'- uCGguCGG-GUUG-CGCGGGCGUu---CCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 48502 | 0.76 | 0.086449 |
Target: 5'- gAGCCGGCCUGagcccGCGCGCCCaGCAuccugaacGGaGGCa -3' miRNA: 3'- -UCGGUCGGGU-----UGCGCGGG-CGU--------UC-CCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 49857 | 0.75 | 0.099013 |
Target: 5'- -aCCGGCUCGACGCcgcgucggacGCCCGCu-GGGCa -3' miRNA: 3'- ucGGUCGGGUUGCG----------CGGGCGuuCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 61372 | 0.74 | 0.10999 |
Target: 5'- gAGCCGGgCCAuguuuugGCGCGCCgGCGGcGGCu -3' miRNA: 3'- -UCGGUCgGGU-------UGCGCGGgCGUUcCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 34158 | 0.73 | 0.122752 |
Target: 5'- cGCCagAGCCUGGC-CGCCCaGCAgcAGGGCg -3' miRNA: 3'- uCGG--UCGGGUUGcGCGGG-CGU--UCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 53537 | 0.73 | 0.134365 |
Target: 5'- uGCCGgacGCCCAAgccUGCGCCCGCAucuacuucgcuuugcAGGGa -3' miRNA: 3'- uCGGU---CGGGUU---GCGCGGGCGU---------------UCCCg -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 52226 | 0.72 | 0.147756 |
Target: 5'- cAGCCGGCCCugGACaaccugGCCaacaGCAAGGGCc -3' miRNA: 3'- -UCGGUCGGG--UUGcg----CGGg---CGUUCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 13221 | 0.72 | 0.159832 |
Target: 5'- cGCCucCCCAcugcGCGCGCgCUGCAugAGGGCu -3' miRNA: 3'- uCGGucGGGU----UGCGCG-GGCGU--UCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 18061 | 0.72 | 0.167935 |
Target: 5'- gGGCCAGCagguucuCCAcuGCGCGCUgGUuuuGGGCa -3' miRNA: 3'- -UCGGUCG-------GGU--UGCGCGGgCGuu-CCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 64008 | 0.72 | 0.167935 |
Target: 5'- uGGCCGGCacaCCGcuucgugACGCGCCUGCAucGGUa -3' miRNA: 3'- -UCGGUCG---GGU-------UGCGCGGGCGUucCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 34697 | 0.71 | 0.177317 |
Target: 5'- cAGCCAGCUUcgGAUGCGUCUccaGCGGGaGGCa -3' miRNA: 3'- -UCGGUCGGG--UUGCGCGGG---CGUUC-CCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 39776 | 0.71 | 0.186682 |
Target: 5'- cGGUCAGC--GGCGUgucGCCCGCAGGuGGCa -3' miRNA: 3'- -UCGGUCGggUUGCG---CGGGCGUUC-CCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 21924 | 0.71 | 0.19598 |
Target: 5'- uGCaCGGCCUGAUGCGCguccaccaccucgUCGCGAGGGa -3' miRNA: 3'- uCG-GUCGGGUUGCGCG-------------GGCGUUCCCg -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 22716 | 0.7 | 0.214168 |
Target: 5'- cGCCGGCCaCGgacaggcacacacucAgGCGCCCGCuacucucguuGGGGUa -3' miRNA: 3'- uCGGUCGG-GU---------------UgCGCGGGCGu---------UCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 58369 | 0.7 | 0.222397 |
Target: 5'- uGGCCAGCCCAACacugGUGCagaCCGgCuacggugagcgcgAAGGGCa -3' miRNA: 3'- -UCGGUCGGGUUG----CGCG---GGC-G-------------UUCCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 26379 | 0.7 | 0.228031 |
Target: 5'- aAGCaCAGCggaaaggugacuuCCAGCGCGCCgGCAucGGUc -3' miRNA: 3'- -UCG-GUCG-------------GGUUGCGCGGgCGUucCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 15580 | 0.69 | 0.240256 |
Target: 5'- cGCCuGGUCCAGgGCGaagCCGCGAgcacGGGCg -3' miRNA: 3'- uCGG-UCGGGUUgCGCg--GGCGUU----CCCG- -5' |
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30806 | 5' | -62.2 | NC_006552.1 | + | 53817 | 0.69 | 0.240256 |
Target: 5'- uGGCCGGCUggccgaaaucgCAGCGCaauaCCUGCGaaAGGGCu -3' miRNA: 3'- -UCGGUCGG-----------GUUGCGc---GGGCGU--UCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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