miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30806 5' -62.2 NC_006552.1 + 53597 0.66 0.410954
Target:  5'- cGGCCAGUUCggUGcCGCCgGCugagguGGaGGCc -3'
miRNA:   3'- -UCGGUCGGGuuGC-GCGGgCGu-----UC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 34697 0.71 0.177317
Target:  5'- cAGCCAGCUUcgGAUGCGUCUccaGCGGGaGGCa -3'
miRNA:   3'- -UCGGUCGGG--UUGCGCGGG---CGUUC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 39776 0.71 0.186682
Target:  5'- cGGUCAGC--GGCGUgucGCCCGCAGGuGGCa -3'
miRNA:   3'- -UCGGUCGggUUGCG---CGGGCGUUC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 21924 0.71 0.19598
Target:  5'- uGCaCGGCCUGAUGCGCguccaccaccucgUCGCGAGGGa -3'
miRNA:   3'- uCG-GUCGGGUUGCGCG-------------GGCGUUCCCg -5'
30806 5' -62.2 NC_006552.1 + 22716 0.7 0.214168
Target:  5'- cGCCGGCCaCGgacaggcacacacucAgGCGCCCGCuacucucguuGGGGUa -3'
miRNA:   3'- uCGGUCGG-GU---------------UgCGCGGGCGu---------UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 58369 0.7 0.222397
Target:  5'- uGGCCAGCCCAACacugGUGCagaCCGgCuacggugagcgcgAAGGGCa -3'
miRNA:   3'- -UCGGUCGGGUUG----CGCG---GGC-G-------------UUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 26379 0.7 0.228031
Target:  5'- aAGCaCAGCggaaaggugacuuCCAGCGCGCCgGCAucGGUc -3'
miRNA:   3'- -UCG-GUCG-------------GGUUGCGCGGgCGUucCCG- -5'
30806 5' -62.2 NC_006552.1 + 15580 0.69 0.240256
Target:  5'- cGCCuGGUCCAGgGCGaagCCGCGAgcacGGGCg -3'
miRNA:   3'- uCGG-UCGGGUUgCGCg--GGCGUU----CCCG- -5'
30806 5' -62.2 NC_006552.1 + 53817 0.69 0.240256
Target:  5'- uGGCCGGCUggccgaaaucgCAGCGCaauaCCUGCGaaAGGGCu -3'
miRNA:   3'- -UCGGUCGG-----------GUUGCGc---GGGCGU--UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 18061 0.72 0.167935
Target:  5'- gGGCCAGCagguucuCCAcuGCGCGCUgGUuuuGGGCa -3'
miRNA:   3'- -UCGGUCG-------GGU--UGCGCGGgCGuu-CCCG- -5'
30806 5' -62.2 NC_006552.1 + 64008 0.72 0.167935
Target:  5'- uGGCCGGCacaCCGcuucgugACGCGCCUGCAucGGUa -3'
miRNA:   3'- -UCGGUCG---GGU-------UGCGCGGGCGUucCCG- -5'
30806 5' -62.2 NC_006552.1 + 13221 0.72 0.159832
Target:  5'- cGCCucCCCAcugcGCGCGCgCUGCAugAGGGCu -3'
miRNA:   3'- uCGGucGGGU----UGCGCG-GGCGU--UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 41420 0.77 0.063947
Target:  5'- cGCCAGUUCGGCcGCGUCCGUggGGaGCg -3'
miRNA:   3'- uCGGUCGGGUUG-CGCGGGCGuuCC-CG- -5'
30806 5' -62.2 NC_006552.1 + 13928 0.76 0.075413
Target:  5'- uGCguGCCaCGACaGCGCCCGCGucgcGGGCc -3'
miRNA:   3'- uCGguCGG-GUUG-CGCGGGCGUu---CCCG- -5'
30806 5' -62.2 NC_006552.1 + 48502 0.76 0.086449
Target:  5'- gAGCCGGCCUGagcccGCGCGCCCaGCAuccugaacGGaGGCa -3'
miRNA:   3'- -UCGGUCGGGU-----UGCGCGGG-CGU--------UC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 49857 0.75 0.099013
Target:  5'- -aCCGGCUCGACGCcgcgucggacGCCCGCu-GGGCa -3'
miRNA:   3'- ucGGUCGGGUUGCG----------CGGGCGuuCCCG- -5'
30806 5' -62.2 NC_006552.1 + 61372 0.74 0.10999
Target:  5'- gAGCCGGgCCAuguuuugGCGCGCCgGCGGcGGCu -3'
miRNA:   3'- -UCGGUCgGGU-------UGCGCGGgCGUUcCCG- -5'
30806 5' -62.2 NC_006552.1 + 34158 0.73 0.122752
Target:  5'- cGCCagAGCCUGGC-CGCCCaGCAgcAGGGCg -3'
miRNA:   3'- uCGG--UCGGGUUGcGCGGG-CGU--UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 53537 0.73 0.134365
Target:  5'- uGCCGgacGCCCAAgccUGCGCCCGCAucuacuucgcuuugcAGGGa -3'
miRNA:   3'- uCGGU---CGGGUU---GCGCGGGCGU---------------UCCCg -5'
30806 5' -62.2 NC_006552.1 + 52226 0.72 0.147756
Target:  5'- cAGCCGGCCCugGACaaccugGCCaacaGCAAGGGCc -3'
miRNA:   3'- -UCGGUCGGG--UUGcg----CGGg---CGUUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.