miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30806 5' -62.2 NC_006552.1 + 3577 0.67 0.320786
Target:  5'- uGCUGGCCgAGC-CGCCgGCGccGGCa -3'
miRNA:   3'- uCGGUCGGgUUGcGCGGgCGUucCCG- -5'
30806 5' -62.2 NC_006552.1 + 4767 0.66 0.368058
Target:  5'- uGCCGGCUgcgucaccugCGGCGCcaccacuacaGCCCccaccugcgGCGGGGGCg -3'
miRNA:   3'- uCGGUCGG----------GUUGCG----------CGGG---------CGUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 5074 0.67 0.343838
Target:  5'- aGGCCAG-CCAGCGCuaUCGCAGccagaacGGCg -3'
miRNA:   3'- -UCGGUCgGGUUGCGcgGGCGUUc------CCG- -5'
30806 5' -62.2 NC_006552.1 + 5799 1.11 0.000171
Target:  5'- aAGCCAGCCCAACGCGCCCGCAAGGGCg -3'
miRNA:   3'- -UCGGUCGGGUUGCGCGGGCGUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 8032 0.67 0.320786
Target:  5'- uGCaUAGCCCu-CGC-CCUGCAAcuGGGCg -3'
miRNA:   3'- uCG-GUCGGGuuGCGcGGGCGUU--CCCG- -5'
30806 5' -62.2 NC_006552.1 + 9935 0.68 0.270908
Target:  5'- uGCCGGUCUuuugcgaauACGCGUgggcgauCCGCAGGGGg -3'
miRNA:   3'- uCGGUCGGGu--------UGCGCG-------GGCGUUCCCg -5'
30806 5' -62.2 NC_006552.1 + 13021 0.68 0.306071
Target:  5'- cGGcCCAGCgCAaauuccuccaacACGCGaCCgGCcAGGGCa -3'
miRNA:   3'- -UC-GGUCGgGU------------UGCGC-GGgCGuUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 13221 0.72 0.159832
Target:  5'- cGCCucCCCAcugcGCGCGCgCUGCAugAGGGCu -3'
miRNA:   3'- uCGGucGGGU----UGCGCG-GGCGU--UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 13928 0.76 0.075413
Target:  5'- uGCguGCCaCGACaGCGCCCGCGucgcGGGCc -3'
miRNA:   3'- uCGguCGG-GUUG-CGCGGGCGUu---CCCG- -5'
30806 5' -62.2 NC_006552.1 + 14094 0.68 0.29891
Target:  5'- cGGCCGGCCgGGcCGCGCUucaugucgcgCGCAuccGGCg -3'
miRNA:   3'- -UCGGUCGGgUU-GCGCGG----------GCGUuc-CCG- -5'
30806 5' -62.2 NC_006552.1 + 15463 0.66 0.410954
Target:  5'- uGCCGGCgCCAGCGauacaGCCgGUuguGcGGCu -3'
miRNA:   3'- uCGGUCG-GGUUGCg----CGGgCGuu-C-CCG- -5'
30806 5' -62.2 NC_006552.1 + 15525 0.66 0.382294
Target:  5'- gGGCCuGCUgGAUGuCGuCCUGCAcgccgauuggcgucGGGGCu -3'
miRNA:   3'- -UCGGuCGGgUUGC-GC-GGGCGU--------------UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 15580 0.69 0.240256
Target:  5'- cGCCuGGUCCAGgGCGaagCCGCGAgcacGGGCg -3'
miRNA:   3'- uCGG-UCGGGUUgCGCg--GGCGUU----CCCG- -5'
30806 5' -62.2 NC_006552.1 + 17756 0.67 0.328339
Target:  5'- aGGCCGugucguuauucGCCCGA-GUGCUCGCcAGGGa -3'
miRNA:   3'- -UCGGU-----------CGGGUUgCGCGGGCGuUCCCg -5'
30806 5' -62.2 NC_006552.1 + 18061 0.72 0.167935
Target:  5'- gGGCCAGCagguucuCCAcuGCGCGCUgGUuuuGGGCa -3'
miRNA:   3'- -UCGGUCG-------GGU--UGCGCGGgCGuu-CCCG- -5'
30806 5' -62.2 NC_006552.1 + 19743 0.67 0.351782
Target:  5'- cGCUGGCCgCuGCGCGCCagGCuucuaccuGGGCc -3'
miRNA:   3'- uCGGUCGG-GuUGCGCGGg-CGuu------CCCG- -5'
30806 5' -62.2 NC_006552.1 + 20664 0.68 0.284979
Target:  5'- gGGCaCGGgCgAACaGCGCCUGCucgauGGGCg -3'
miRNA:   3'- -UCG-GUCgGgUUG-CGCGGGCGuu---CCCG- -5'
30806 5' -62.2 NC_006552.1 + 21059 0.67 0.351782
Target:  5'- cGGCCAGCagguCGUcgauauucagGCCCcCAGGGGCu -3'
miRNA:   3'- -UCGGUCGgguuGCG----------CGGGcGUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 21924 0.71 0.19598
Target:  5'- uGCaCGGCCUGAUGCGCguccaccaccucgUCGCGAGGGa -3'
miRNA:   3'- uCG-GUCGGGUUGCGCG-------------GGCGUUCCCg -5'
30806 5' -62.2 NC_006552.1 + 22716 0.7 0.214168
Target:  5'- cGCCGGCCaCGgacaggcacacacucAgGCGCCCGCuacucucguuGGGGUa -3'
miRNA:   3'- uCGGUCGG-GU---------------UgCGCGGGCGu---------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.