miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30857 3' -61.9 NC_006552.1 + 61765 0.66 0.4624
Target:  5'- uGCCaGGC-CUguuGC-GGUGGCGGCCu -3'
miRNA:   3'- gCGG-CCGcGAagcCGaCCACCGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 35432 0.66 0.456786
Target:  5'- gGCCGcagccuucgcgucuuGCGCgUUCGGCUGcUGcuGCGACUg -3'
miRNA:   3'- gCGGC---------------CGCG-AAGCCGACcAC--CGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 15747 0.66 0.443831
Target:  5'- aGCCGGCauc-CGGC-GGUGGCGcgaGCUu -3'
miRNA:   3'- gCGGCCGcgaaGCCGaCCACCGC---UGG- -5'
30857 3' -61.9 NC_006552.1 + 1927 0.66 0.434704
Target:  5'- aCGgCGGCGUcguugUCGGgaGuGUGGaCGACg -3'
miRNA:   3'- -GCgGCCGCGa----AGCCgaC-CACC-GCUGg -5'
30857 3' -61.9 NC_006552.1 + 11331 0.66 0.425688
Target:  5'- uCGgCGGCGUcgaUGGCUuccucGGUgacGGCGGCCg -3'
miRNA:   3'- -GCgGCCGCGaa-GCCGA-----CCA---CCGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 33213 0.66 0.423898
Target:  5'- aCGCCGGCcaggaugccgcgcuGCaugucuuccgggcacUCGGCgaacGGUGGCG-CCa -3'
miRNA:   3'- -GCGGCCG--------------CGa--------------AGCCGa---CCACCGCuGG- -5'
30857 3' -61.9 NC_006552.1 + 60036 0.67 0.407994
Target:  5'- uGCUGGCGUgacgUGGUUGG-GGCugcgcucgaGGCCu -3'
miRNA:   3'- gCGGCCGCGaa--GCCGACCaCCG---------CUGG- -5'
30857 3' -61.9 NC_006552.1 + 28612 0.67 0.407122
Target:  5'- uCGgCGGCGgUUcgaugccuuccagCGGCaGGUaacGGCGGCCg -3'
miRNA:   3'- -GCgGCCGCgAA-------------GCCGaCCA---CCGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 50302 0.67 0.398461
Target:  5'- cCGCCgGGCGCUcaccgaaguugcgUCGGCaaucggcgugcUGGcccUGGUGGCUc -3'
miRNA:   3'- -GCGG-CCGCGA-------------AGCCG-----------ACC---ACCGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 33381 0.67 0.390768
Target:  5'- gGCCGGCcCUUCGuagGGcGGCGGCg -3'
miRNA:   3'- gCGGCCGcGAAGCcgaCCaCCGCUGg -5'
30857 3' -61.9 NC_006552.1 + 2041 0.67 0.389919
Target:  5'- gCGCCugggacaGGCGCUUgagcgcgcCGGCgucGUGcGCGGCCu -3'
miRNA:   3'- -GCGG-------CCGCGAA--------GCCGac-CAC-CGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 7716 0.67 0.365835
Target:  5'- aGCCGGCGCauugcgcugCGGUUGGUcuuugucaGGCG-Ca -3'
miRNA:   3'- gCGGCCGCGaa-------GCCGACCA--------CCGCuGg -5'
30857 3' -61.9 NC_006552.1 + 26754 0.67 0.365835
Target:  5'- aGuuGGCGgaaCGGCUGGUccGUGACCu -3'
miRNA:   3'- gCggCCGCgaaGCCGACCAc-CGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 52946 0.67 0.362595
Target:  5'- gCGCCGGCGCccgccgccggugCGGCauccgGGUGcGCGuuCa -3'
miRNA:   3'- -GCGGCCGCGaa----------GCCGa----CCAC-CGCugG- -5'
30857 3' -61.9 NC_006552.1 + 61373 0.68 0.349834
Target:  5'- aGCCGGgccaUGUUUUGGCgcgccGGcGGCGGCUa -3'
miRNA:   3'- gCGGCC----GCGAAGCCGa----CCaCCGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 26212 0.68 0.342022
Target:  5'- uGCCGGUcgGCaUgGGCgacaGGUGGCGAa- -3'
miRNA:   3'- gCGGCCG--CGaAgCCGa---CCACCGCUgg -5'
30857 3' -61.9 NC_006552.1 + 54554 0.68 0.342022
Target:  5'- uGCCGGCGCaa-GGCc--UGGUGAUCg -3'
miRNA:   3'- gCGGCCGCGaagCCGaccACCGCUGG- -5'
30857 3' -61.9 NC_006552.1 + 53593 0.68 0.342022
Target:  5'- gCGCCGGCcaguucgguGCcgcCGGCUgaGGUGGaGGCCu -3'
miRNA:   3'- -GCGGCCG---------CGaa-GCCGA--CCACCgCUGG- -5'
30857 3' -61.9 NC_006552.1 + 38855 0.68 0.334337
Target:  5'- uGCCGGUGCguguaCGGC--GUGG-GACCa -3'
miRNA:   3'- gCGGCCGCGaa---GCCGacCACCgCUGG- -5'
30857 3' -61.9 NC_006552.1 + 32706 0.68 0.319348
Target:  5'- gGCCGGCGCgg-GGCcGGUGGagcGCUc -3'
miRNA:   3'- gCGGCCGCGaagCCGaCCACCgc-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.