miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30860 5' -56.2 NC_006552.1 + 50509 0.66 0.705091
Target:  5'- -gCCACggCGccgGCAGCCGucaaGCGAGCa- -3'
miRNA:   3'- aaGGUGaaGCa--CGUCGGC----CGCUUGcg -5'
30860 5' -56.2 NC_006552.1 + 41030 0.66 0.694385
Target:  5'- aUCCGCgUUGgcUGCGGCCGuaGGgaaGCGCu -3'
miRNA:   3'- aAGGUGaAGC--ACGUCGGCcgCU---UGCG- -5'
30860 5' -56.2 NC_006552.1 + 44203 0.66 0.683619
Target:  5'- cUUCGCgcUCGUggcGCAGgUGGCGAucACGCa -3'
miRNA:   3'- aAGGUGa-AGCA---CGUCgGCCGCU--UGCG- -5'
30860 5' -56.2 NC_006552.1 + 5245 0.66 0.677136
Target:  5'- -gCCACUucagcaggUCGUcGCAcgccugccgguaguuGCCGGCGAgcaagucgcgGCGCa -3'
miRNA:   3'- aaGGUGA--------AGCA-CGU---------------CGGCCGCU----------UGCG- -5'
30860 5' -56.2 NC_006552.1 + 56809 0.66 0.661954
Target:  5'- aUCCGC-UCGaGCGcGcCCGGCGGAUGg -3'
miRNA:   3'- aAGGUGaAGCaCGU-C-GGCCGCUUGCg -5'
30860 5' -56.2 NC_006552.1 + 15958 0.67 0.651076
Target:  5'- -gCCGCUcuucuugccuccUCG-GCAGCCuGCugGAGCGCg -3'
miRNA:   3'- aaGGUGA------------AGCaCGUCGGcCG--CUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 39623 0.67 0.644539
Target:  5'- cUUCCACUgCGgGCGggaugcccagugccuGCUGGCG-ACGCa -3'
miRNA:   3'- -AAGGUGAaGCaCGU---------------CGGCCGCuUGCG- -5'
30860 5' -56.2 NC_006552.1 + 44392 0.67 0.629277
Target:  5'- gUCCAg-UCa-GCAGcCCGGCGAuuGCGCu -3'
miRNA:   3'- aAGGUgaAGcaCGUC-GGCCGCU--UGCG- -5'
30860 5' -56.2 NC_006552.1 + 12706 0.67 0.628187
Target:  5'- cUCCAgUUCGUcGUAGCgaauacgcuguucCGGCGucagGCGCa -3'
miRNA:   3'- aAGGUgAAGCA-CGUCG-------------GCCGCu---UGCG- -5'
30860 5' -56.2 NC_006552.1 + 58445 0.67 0.618377
Target:  5'- -gCCGCUuggcaccgUCGUcGCAGgCGGCGugaagcACGCa -3'
miRNA:   3'- aaGGUGA--------AGCA-CGUCgGCCGCu-----UGCG- -5'
30860 5' -56.2 NC_006552.1 + 3134 0.67 0.618377
Target:  5'- cUCCGCUUCGUa-AG-CGGCG-ACGCc -3'
miRNA:   3'- aAGGUGAAGCAcgUCgGCCGCuUGCG- -5'
30860 5' -56.2 NC_006552.1 + 10139 0.67 0.618377
Target:  5'- gUCCACcaaGUcGCGGCCGuuGAACGUc -3'
miRNA:   3'- aAGGUGaagCA-CGUCGGCcgCUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 7607 0.67 0.618377
Target:  5'- -gUCGCccaUGUGCAGaCCGGCGGcgguuugccGCGCa -3'
miRNA:   3'- aaGGUGaa-GCACGUC-GGCCGCU---------UGCG- -5'
30860 5' -56.2 NC_006552.1 + 62433 0.67 0.607488
Target:  5'- gUCCcCgaCGUGCccGCCGGCGuuccGGCGCc -3'
miRNA:   3'- aAGGuGaaGCACGu-CGGCCGC----UUGCG- -5'
30860 5' -56.2 NC_006552.1 + 9793 0.67 0.607488
Target:  5'- -aUCAUUUCGUGCAGCaacacuGCcGGCGCg -3'
miRNA:   3'- aaGGUGAAGCACGUCGgc----CGcUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 34808 0.67 0.59662
Target:  5'- -aCCACUUCGccuucgGaCGGCCgaGGCG-GCGCa -3'
miRNA:   3'- aaGGUGAAGCa-----C-GUCGG--CCGCuUGCG- -5'
30860 5' -56.2 NC_006552.1 + 32687 0.68 0.585782
Target:  5'- -cCUGCUUgGUGUcgucGCCGGCcGGCGCg -3'
miRNA:   3'- aaGGUGAAgCACGu---CGGCCGcUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 38935 0.68 0.585782
Target:  5'- -aCCuuCUUCGgagaaaUGCGGCCGGaCGccAGCGCg -3'
miRNA:   3'- aaGGu-GAAGC------ACGUCGGCC-GC--UUGCG- -5'
30860 5' -56.2 NC_006552.1 + 16335 0.68 0.585782
Target:  5'- -gCCACgggaUGCGGCCGGCuGAcCGCc -3'
miRNA:   3'- aaGGUGaagcACGUCGGCCG-CUuGCG- -5'
30860 5' -56.2 NC_006552.1 + 22526 0.68 0.564228
Target:  5'- -gCCGCcUUGUGa--UCGGCGAGCGCg -3'
miRNA:   3'- aaGGUGaAGCACgucGGCCGCUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.