Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30876 | 3' | -57.1 | NC_006552.1 | + | 921 | 0.66 | 0.639593 |
Target: 5'- -gCCACUGU-UCAGCCACGugucgaAACGUCu -3' miRNA: 3'- caGGUGGCGuAGUCGGUGC------UUGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 63206 | 0.66 | 0.639593 |
Target: 5'- uGUCCugGCCGCAaCGGUgaacccucgcggCACGuGCGCCGg -3' miRNA: 3'- -CAGG--UGGCGUaGUCG------------GUGCuUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 31388 | 0.66 | 0.650405 |
Target: 5'- cGUCaCAuCCGCAccgUCGGCgGCGc-CGCCAg -3' miRNA: 3'- -CAG-GU-GGCGU---AGUCGgUGCuuGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 3655 | 0.66 | 0.650405 |
Target: 5'- -aCCGCCGaCGaCGGUgAccCGAACGCCAg -3' miRNA: 3'- caGGUGGC-GUaGUCGgU--GCUUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 56863 | 0.66 | 0.650405 |
Target: 5'- --gCGCCGCGgcgAGCgGCGAACGCa- -3' miRNA: 3'- cagGUGGCGUag-UCGgUGCUUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 8481 | 0.66 | 0.6612 |
Target: 5'- uGUCCGCCuucuCGUCGGCCGuCaGACGCa- -3' miRNA: 3'- -CAGGUGGc---GUAGUCGGU-GcUUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 33784 | 0.66 | 0.670894 |
Target: 5'- -cCgGCCGCGUUGGUCGCGAgcugauaACGCa- -3' miRNA: 3'- caGgUGGCGUAGUCGGUGCU-------UGCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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