Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30876 | 3' | -57.1 | NC_006552.1 | + | 63479 | 0.73 | 0.290906 |
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Target: 5'- uUCCGCUGC--CGGCCGCcGGCGCCGg -3' miRNA: 3'- cAGGUGGCGuaGUCGGUGcUUGCGGU- -5' |
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| 30876 | 3' | -57.1 | NC_006552.1 | + | 22143 | 0.73 | 0.270019 |
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Target: 5'- cGUCCACCGUca-GGCCGCGcACGCg- -3' miRNA: 3'- -CAGGUGGCGuagUCGGUGCuUGCGgu -5' |
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| 30876 | 3' | -57.1 | NC_006552.1 | + | 8170 | 0.74 | 0.240363 |
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Target: 5'- cUCCugCGCAUCGGCCGCGuccaucaccuggucGCGCa- -3' miRNA: 3'- cAGGugGCGUAGUCGGUGCu-------------UGCGgu -5' |
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| 30876 | 3' | -57.1 | NC_006552.1 | + | 8116 | 0.74 | 0.225997 |
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Target: 5'- uUCCgGCCauGCAUCAGCCAUcuGCGCCAg -3' miRNA: 3'- cAGG-UGG--CGUAGUCGGUGcuUGCGGU- -5' |
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| 30876 | 3' | -57.1 | NC_006552.1 | + | 63371 | 0.75 | 0.193249 |
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Target: 5'- gGUCCGCaccuGCGUCGGCCACGccaaaGCCAu -3' miRNA: 3'- -CAGGUGg---CGUAGUCGGUGCuug--CGGU- -5' |
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| 30876 | 3' | -57.1 | NC_006552.1 | + | 63763 | 0.78 | 0.125189 |
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Target: 5'- -aCCGCCGCcaauaugcgccagGUC-GCCGCGGACGCCAu -3' miRNA: 3'- caGGUGGCG-------------UAGuCGGUGCUUGCGGU- -5' |
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| 30876 | 3' | -57.1 | NC_006552.1 | + | 53218 | 0.82 | 0.06783 |
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Target: 5'- aUCCACgGCAUCAGCCACGAACaGgCGa -3' miRNA: 3'- cAGGUGgCGUAGUCGGUGCUUG-CgGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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