miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30882 3' -62 NC_006552.1 + 26704 0.69 0.310678
Target:  5'- aCUGGuCGCccaGGGCGCCgaaGGCGUCGCc -3'
miRNA:   3'- gGACU-GCGa--CCUGUGGgg-CCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 37997 0.69 0.296586
Target:  5'- aUCUGcUGCUGGAUcuGCUCCGGgGuCUGCu -3'
miRNA:   3'- -GGACuGCGACCUG--UGGGGCCgC-GGCG- -5'
30882 3' -62 NC_006552.1 + 59059 0.69 0.289729
Target:  5'- --cGAgGCUGG-CGCUCUGcGCGUCGCu -3'
miRNA:   3'- ggaCUgCGACCuGUGGGGC-CGCGGCG- -5'
30882 3' -62 NC_006552.1 + 52942 0.69 0.289729
Target:  5'- gCCUG-CGCcGGcgccCGCCgCCGGUGCgGCa -3'
miRNA:   3'- -GGACuGCGaCCu---GUGG-GGCCGCGgCG- -5'
30882 3' -62 NC_006552.1 + 2052 0.69 0.289729
Target:  5'- --aGGCGCuUGaGCGCgCCGGCGUCGUg -3'
miRNA:   3'- ggaCUGCG-ACcUGUGgGGCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 53590 0.69 0.282996
Target:  5'- -gUGGCGCcGGcCAgUUCGGUGCCGCc -3'
miRNA:   3'- ggACUGCGaCCuGUgGGGCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 48992 0.7 0.276388
Target:  5'- gCCUcccCGCcGGGCAagCCCGGCGgCGCg -3'
miRNA:   3'- -GGAcu-GCGaCCUGUg-GGGCCGCgGCG- -5'
30882 3' -62 NC_006552.1 + 64134 0.7 0.276388
Target:  5'- gCCUGAUucgcaacgcaGCUcGcGcCGCCCUGGCGCaCGCg -3'
miRNA:   3'- -GGACUG----------CGA-C-CuGUGGGGCCGCG-GCG- -5'
30882 3' -62 NC_006552.1 + 14837 0.7 0.275734
Target:  5'- gCCUucGAUGCUGGGCGCCuuGGgcuuguucaggcuCGCCa- -3'
miRNA:   3'- -GGA--CUGCGACCUGUGGggCC-------------GCGGcg -5'
30882 3' -62 NC_006552.1 + 53995 0.7 0.269904
Target:  5'- gCCaGGCGC--GugGCCCUGGCccugGCCGCg -3'
miRNA:   3'- -GGaCUGCGacCugUGGGGCCG----CGGCG- -5'
30882 3' -62 NC_006552.1 + 2149 0.7 0.261659
Target:  5'- gCCgUGGCGCUGGcCACcauaaccccucuCCCGcgauagcccauaccGCGCCGCu -3'
miRNA:   3'- -GG-ACUGCGACCuGUG------------GGGC--------------CGCGGCG- -5'
30882 3' -62 NC_006552.1 + 18300 0.7 0.257305
Target:  5'- aCCUGGCcucGCccGGGCGCagcacuggaaCuuGGCGCCGCu -3'
miRNA:   3'- -GGACUG---CGa-CCUGUG----------GggCCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 29167 0.7 0.244005
Target:  5'- gCCUGGCGCUGGaACACCagcauugaGCUGCa -3'
miRNA:   3'- -GGACUGCGACC-UGUGGggccg---CGGCG- -5'
30882 3' -62 NC_006552.1 + 12341 0.7 0.239312
Target:  5'- cCCUGACuGC-GGuCAUCCUcgaaGGCGUCGCg -3'
miRNA:   3'- -GGACUG-CGaCCuGUGGGG----CCGCGGCG- -5'
30882 3' -62 NC_006552.1 + 44464 0.71 0.233553
Target:  5'- aCUG-CGCUGccggcgccggcaGACGCCCCaGGCGuuCCGCu -3'
miRNA:   3'- gGACuGCGAC------------CUGUGGGG-CCGC--GGCG- -5'
30882 3' -62 NC_006552.1 + 3571 0.71 0.233553
Target:  5'- gCCaGGUGCUGGccgaGCCgCCGGCGCCGg -3'
miRNA:   3'- -GGaCUGCGACCug--UGG-GGCCGCGGCg -5'
30882 3' -62 NC_006552.1 + 61632 0.71 0.216971
Target:  5'- gCCUGAU-CUGGAUGCCCgaGGCcGCCGg -3'
miRNA:   3'- -GGACUGcGACCUGUGGGg-CCG-CGGCg -5'
30882 3' -62 NC_006552.1 + 55922 0.71 0.216971
Target:  5'- gCCUGuCGCcGGAgAUCCCGGCGgacaagCGCa -3'
miRNA:   3'- -GGACuGCGaCCUgUGGGGCCGCg-----GCG- -5'
30882 3' -62 NC_006552.1 + 9722 0.71 0.211672
Target:  5'- cCUUGACGCUGGcgcgauuCAUCagcaUGGCGCCGg -3'
miRNA:   3'- -GGACUGCGACCu------GUGGg---GCCGCGGCg -5'
30882 3' -62 NC_006552.1 + 29215 0.71 0.206485
Target:  5'- gCUGAUGCggUGGACAUCCUGGaucgcgGUCGCc -3'
miRNA:   3'- gGACUGCG--ACCUGUGGGGCCg-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.