Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 18264 | 0.69 | 0.688782 |
|
Target: 5'- uCCAGCGCu---CCggUUGgcgcaccaGCAGCCGGc -3' miRNA: 3'- -GGUCGCGuauuGGa-AGCa-------CGUCGGCC- -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 52478 | 0.69 | 0.667109 |
|
Target: 5'- gCCAGCGCGUGGgCaaCcUGCGGCCa- -3' miRNA: 3'- -GGUCGCGUAUUgGaaGcACGUCGGcc -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 35331 | 0.7 | 0.645306 |
|
Target: 5'- gCGGCG-AUGGCCUcgaaUCGguUGcCAGCCGGa -3' miRNA: 3'- gGUCGCgUAUUGGA----AGC--AC-GUCGGCC- -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 26878 | 0.7 | 0.623456 |
|
Target: 5'- gCAGCGCGgcAUCUUCG-GCGacguuguugauGCCGGc -3' miRNA: 3'- gGUCGCGUauUGGAAGCaCGU-----------CGGCC- -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 8028 | 0.71 | 0.579917 |
|
Target: 5'- gCGGUGCAUAGCCcUCGcccUGCAaCUGGg -3' miRNA: 3'- gGUCGCGUAUUGGaAGC---ACGUcGGCC- -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 10849 | 0.71 | 0.569118 |
|
Target: 5'- gCGGCGCugccGACuCUUCG-GCuGCCGGc -3' miRNA: 3'- gGUCGCGua--UUG-GAAGCaCGuCGGCC- -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 38868 | 0.71 | 0.547679 |
|
Target: 5'- aCGGCGUggGACCaUCGUGCAGgCa- -3' miRNA: 3'- gGUCGCGuaUUGGaAGCACGUCgGcc -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 21675 | 0.71 | 0.547679 |
|
Target: 5'- uCCAGCGCAUAAacgccgUCUUCG-GCGauGCCGu -3' miRNA: 3'- -GGUCGCGUAUU------GGAAGCaCGU--CGGCc -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 40370 | 0.72 | 0.516028 |
|
Target: 5'- -uGGCGCA--GCCaUCGcUGCGGCCGa -3' miRNA: 3'- ggUCGCGUauUGGaAGC-ACGUCGGCc -5' |
|||||||
| 30883 | 5' | -53.7 | NC_006552.1 | + | 12944 | 0.72 | 0.505638 |
|
Target: 5'- gCCAGCGCGcUGGCCUUggccuggcggugCGUucgaggccaGCAGCCGa -3' miRNA: 3'- -GGUCGCGU-AUUGGAA------------GCA---------CGUCGGCc -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home