Results 1 - 20 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30906 | 5' | -63.6 | NC_006552.1 | + | 44756 | 0.77 | 0.05786 |
Target: 5'- cGGCUCGgGCCgACCGUCGGcggacucgacAUGCCGGa -3' miRNA: 3'- -UCGAGCgCGG-UGGCGGCC----------UACGGCCg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 5255 | 0.76 | 0.066261 |
Target: 5'- cAGgUCGuCGCaCGCCuGCCGGuaguUGCCGGCg -3' miRNA: 3'- -UCgAGC-GCG-GUGG-CGGCCu---ACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 45399 | 0.76 | 0.075831 |
Target: 5'- uGCUCgGCGCCGacgaauuccCCGcCCGGG-GCCGGCg -3' miRNA: 3'- uCGAG-CGCGGU---------GGC-GGCCUaCGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 63972 | 0.74 | 0.104483 |
Target: 5'- uGGCgCGCGCCaccaacuaccugGCCGCCaaGGGccugGCCGGCa -3' miRNA: 3'- -UCGaGCGCGG------------UGGCGG--CCUa---CGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 49859 | 0.72 | 0.143093 |
Target: 5'- cGGCUCGaCGCCG-CGUCGGAcGCCcgcugGGCa -3' miRNA: 3'- -UCGAGC-GCGGUgGCGGCCUaCGG-----CCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 5430 | 0.72 | 0.143093 |
Target: 5'- aGGCUgCGCGCCaguuguucGCCGCgcuggCGGGUGaUCGGCg -3' miRNA: 3'- -UCGA-GCGCGG--------UGGCG-----GCCUAC-GGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 63463 | 0.72 | 0.146842 |
Target: 5'- aGGCcUGUGCaaaugcuucCGCUGCCGGccGCCGGCg -3' miRNA: 3'- -UCGaGCGCG---------GUGGCGGCCuaCGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 10844 | 0.71 | 0.158634 |
Target: 5'- gGGCUgCgGCGCUGCCGacucuUCGGcUGCCGGCu -3' miRNA: 3'- -UCGA-G-CGCGGUGGC-----GGCCuACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 27839 | 0.71 | 0.158634 |
Target: 5'- cGGCUgGCagGCCGuaGCCGuccaccuuGAUGCCGGCg -3' miRNA: 3'- -UCGAgCG--CGGUggCGGC--------CUACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 14987 | 0.71 | 0.16275 |
Target: 5'- cAGCUUGCGCUGuuGUCGG-UGgCGGUa -3' miRNA: 3'- -UCGAGCGCGGUggCGGCCuACgGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 64149 | 0.71 | 0.171273 |
Target: 5'- cAGCUCGCGCCGCC-CUGGcgcacgcGCCGa- -3' miRNA: 3'- -UCGAGCGCGGUGGcGGCCua-----CGGCcg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 52947 | 0.71 | 0.175682 |
Target: 5'- cGCcggCGC-CCGCCGCCGG-UG-CGGCa -3' miRNA: 3'- uCGa--GCGcGGUGGCGGCCuACgGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 3577 | 0.7 | 0.180193 |
Target: 5'- uGCUgGCcgaGCCGCCGGc-GCCGGCa -3' miRNA: 3'- uCGAgCGcggUGGCGGCCuaCGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 7562 | 0.7 | 0.180193 |
Target: 5'- cAGUUCGC-CCugCGCCugcgGGAUGCCGu- -3' miRNA: 3'- -UCGAGCGcGGugGCGG----CCUACGGCcg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 51669 | 0.7 | 0.189521 |
Target: 5'- aAGgUCGaCGCCAUCaaagGGAUGCCGGCc -3' miRNA: 3'- -UCgAGC-GCGGUGGcgg-CCUACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 51020 | 0.7 | 0.194343 |
Target: 5'- aAGCUgaaagaGCGCC-UgGCC-GAUGCCGGCg -3' miRNA: 3'- -UCGAg-----CGCGGuGgCGGcCUACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 34151 | 0.7 | 0.199272 |
Target: 5'- aGGCUUGCGCCAgaGCCuGGccGCCcagcagcagGGCg -3' miRNA: 3'- -UCGAGCGCGGUggCGG-CCuaCGG---------CCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 24701 | 0.7 | 0.199272 |
Target: 5'- cGGCggaaGCGCCGCUuUCGGGUcguaggccaccaGCCGGCg -3' miRNA: 3'- -UCGag--CGCGGUGGcGGCCUA------------CGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 23245 | 0.7 | 0.204309 |
Target: 5'- cGGCUCaCGCCGCCGaCGcaccaaaGUGUCGGCg -3' miRNA: 3'- -UCGAGcGCGGUGGCgGCc------UACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 63812 | 0.7 | 0.204309 |
Target: 5'- uAGCUUcgGCGCCcagGCCaGCCaGccGCCGGCg -3' miRNA: 3'- -UCGAG--CGCGG---UGG-CGGcCuaCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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