miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30906 5' -63.6 NC_006552.1 + 63228 0.66 0.377066
Target:  5'- -cCUCGCGgCACgugCGCCGGcuGUGCCuaucgccucGGCa -3'
miRNA:   3'- ucGAGCGCgGUG---GCGGCC--UACGG---------CCG- -5'
30906 5' -63.6 NC_006552.1 + 3577 0.7 0.180193
Target:  5'- uGCUgGCcgaGCCGCCGGc-GCCGGCa -3'
miRNA:   3'- uCGAgCGcggUGGCGGCCuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 7562 0.7 0.180193
Target:  5'- cAGUUCGC-CCugCGCCugcgGGAUGCCGu- -3'
miRNA:   3'- -UCGAGCGcGGugGCGG----CCUACGGCcg -5'
30906 5' -63.6 NC_006552.1 + 51669 0.7 0.189521
Target:  5'- aAGgUCGaCGCCAUCaaagGGAUGCCGGCc -3'
miRNA:   3'- -UCgAGC-GCGGUGGcgg-CCUACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 51020 0.7 0.194343
Target:  5'- aAGCUgaaagaGCGCC-UgGCC-GAUGCCGGCg -3'
miRNA:   3'- -UCGAg-----CGCGGuGgCGGcCUACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 24701 0.7 0.199272
Target:  5'- cGGCggaaGCGCCGCUuUCGGGUcguaggccaccaGCCGGCg -3'
miRNA:   3'- -UCGag--CGCGGUGGcGGCCUA------------CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 34151 0.7 0.199272
Target:  5'- aGGCUUGCGCCAgaGCCuGGccGCCcagcagcagGGCg -3'
miRNA:   3'- -UCGAGCGCGGUggCGG-CCuaCGG---------CCG- -5'
30906 5' -63.6 NC_006552.1 + 23245 0.7 0.204309
Target:  5'- cGGCUCaCGCCGCCGaCGcaccaaaGUGUCGGCg -3'
miRNA:   3'- -UCGAGcGCGGUGGCgGCc------UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 63812 0.7 0.204309
Target:  5'- uAGCUUcgGCGCCcagGCCaGCCaGccGCCGGCg -3'
miRNA:   3'- -UCGAG--CGCGG---UGG-CGGcCuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 52947 0.71 0.175682
Target:  5'- cGCcggCGC-CCGCCGCCGG-UG-CGGCa -3'
miRNA:   3'- uCGa--GCGcGGUGGCGGCCuACgGCCG- -5'
30906 5' -63.6 NC_006552.1 + 64149 0.71 0.171273
Target:  5'- cAGCUCGCGCCGCC-CUGGcgcacgcGCCGa- -3'
miRNA:   3'- -UCGAGCGCGGUGGcGGCCua-----CGGCcg -5'
30906 5' -63.6 NC_006552.1 + 14987 0.71 0.16275
Target:  5'- cAGCUUGCGCUGuuGUCGG-UGgCGGUa -3'
miRNA:   3'- -UCGAGCGCGGUggCGGCCuACgGCCG- -5'
30906 5' -63.6 NC_006552.1 + 5255 0.76 0.066261
Target:  5'- cAGgUCGuCGCaCGCCuGCCGGuaguUGCCGGCg -3'
miRNA:   3'- -UCgAGC-GCG-GUGG-CGGCCu---ACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 45399 0.76 0.075831
Target:  5'- uGCUCgGCGCCGacgaauuccCCGcCCGGG-GCCGGCg -3'
miRNA:   3'- uCGAG-CGCGGU---------GGC-GGCCUaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 63972 0.74 0.104483
Target:  5'- uGGCgCGCGCCaccaacuaccugGCCGCCaaGGGccugGCCGGCa -3'
miRNA:   3'- -UCGaGCGCGG------------UGGCGG--CCUa---CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 5430 0.72 0.143093
Target:  5'- aGGCUgCGCGCCaguuguucGCCGCgcuggCGGGUGaUCGGCg -3'
miRNA:   3'- -UCGA-GCGCGG--------UGGCG-----GCCUAC-GGCCG- -5'
30906 5' -63.6 NC_006552.1 + 49859 0.72 0.143093
Target:  5'- cGGCUCGaCGCCG-CGUCGGAcGCCcgcugGGCa -3'
miRNA:   3'- -UCGAGC-GCGGUgGCGGCCUaCGG-----CCG- -5'
30906 5' -63.6 NC_006552.1 + 63463 0.72 0.146842
Target:  5'- aGGCcUGUGCaaaugcuucCGCUGCCGGccGCCGGCg -3'
miRNA:   3'- -UCGaGCGCG---------GUGGCGGCCuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 10844 0.71 0.158634
Target:  5'- gGGCUgCgGCGCUGCCGacucuUCGGcUGCCGGCu -3'
miRNA:   3'- -UCGA-G-CGCGGUGGC-----GGCCuACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 27839 0.71 0.158634
Target:  5'- cGGCUgGCagGCCGuaGCCGuccaccuuGAUGCCGGCg -3'
miRNA:   3'- -UCGAgCG--CGGUggCGGC--------CUACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.