miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30906 5' -63.6 NC_006552.1 + 2052 0.66 0.368871
Target:  5'- aGGCgcuugagCGCGCCGgCGUCG--UGCgCGGCc -3'
miRNA:   3'- -UCGa------GCGCGGUgGCGGCcuACG-GCCG- -5'
30906 5' -63.6 NC_006552.1 + 2896 0.68 0.267275
Target:  5'- gGGUUCGUcaucaUCACCGCCGauagcGCCGGCg -3'
miRNA:   3'- -UCGAGCGc----GGUGGCGGCcua--CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 3577 0.7 0.180193
Target:  5'- uGCUgGCcgaGCCGCCGGc-GCCGGCa -3'
miRNA:   3'- uCGAgCGcggUGGCGGCCuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 5255 0.76 0.066261
Target:  5'- cAGgUCGuCGCaCGCCuGCCGGuaguUGCCGGCg -3'
miRNA:   3'- -UCgAGC-GCG-GUGG-CGGCCu---ACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 5430 0.72 0.143093
Target:  5'- aGGCUgCGCGCCaguuguucGCCGCgcuggCGGGUGaUCGGCg -3'
miRNA:   3'- -UCGA-GCGCGG--------UGGCG-----GCCUAC-GGCCG- -5'
30906 5' -63.6 NC_006552.1 + 7562 0.7 0.180193
Target:  5'- cAGUUCGC-CCugCGCCugcgGGAUGCCGu- -3'
miRNA:   3'- -UCGAGCGcGGugGCGG----CCUACGGCcg -5'
30906 5' -63.6 NC_006552.1 + 10382 0.69 0.236892
Target:  5'- gAGUUCGUGCaagAUCGCCGaggccaccucGGUGCgCGGCa -3'
miRNA:   3'- -UCGAGCGCGg--UGGCGGC----------CUACG-GCCG- -5'
30906 5' -63.6 NC_006552.1 + 10844 0.71 0.158634
Target:  5'- gGGCUgCgGCGCUGCCGacucuUCGGcUGCCGGCu -3'
miRNA:   3'- -UCGA-G-CGCGGUGGC-----GGCCuACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 11258 0.68 0.248683
Target:  5'- uGCUCGCGgaUCG-CGUCGGccaauauggcccAUGCCGGCg -3'
miRNA:   3'- uCGAGCGC--GGUgGCGGCC------------UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 11300 0.66 0.33733
Target:  5'- aGGCUCcaGCacguccauGCCuCC-CUGGAUGUCGGCg -3'
miRNA:   3'- -UCGAG--CG--------CGGuGGcGGCCUACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 12937 0.67 0.286974
Target:  5'- aAGCUCG-GCCAgCgCGCUGGccuugGCCuGGCg -3'
miRNA:   3'- -UCGAGCgCGGU-G-GCGGCCua---CGG-CCG- -5'
30906 5' -63.6 NC_006552.1 + 13305 0.67 0.313543
Target:  5'- gGGCUUggGUGCCuCUGCCGGuucggacugggGCCGGg -3'
miRNA:   3'- -UCGAG--CGCGGuGGCGGCCua---------CGGCCg -5'
30906 5' -63.6 NC_006552.1 + 13448 0.66 0.368871
Target:  5'- cGCUCGUcaGCaCGCUGCCaucgGUCGGCg -3'
miRNA:   3'- uCGAGCG--CG-GUGGCGGccuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 13786 0.69 0.233447
Target:  5'- uGCUUGCuguucaguccagaacGCCcgacaacauaGCCGCUGuaGGUGCCGGCg -3'
miRNA:   3'- uCGAGCG---------------CGG----------UGGCGGC--CUACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 13895 0.68 0.260956
Target:  5'- uGGCUUGCuCCACgGCCGccUGCUGaGCa -3'
miRNA:   3'- -UCGAGCGcGGUGgCGGCcuACGGC-CG- -5'
30906 5' -63.6 NC_006552.1 + 13997 0.67 0.307798
Target:  5'- cGCUCGCugGCUGCUGCuguucgagauacCGGAguaGCUGGCu -3'
miRNA:   3'- uCGAGCG--CGGUGGCG------------GCCUa--CGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 14733 0.66 0.358402
Target:  5'- --aUCGCGCCGCggUGCuCGGccuugaucugcggcAUGUCGGCg -3'
miRNA:   3'- ucgAGCGCGGUG--GCG-GCC--------------UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 14868 0.69 0.220087
Target:  5'- aGGCUCGCcaGgUGCUGCCGGA--UCGGCa -3'
miRNA:   3'- -UCGAGCG--CgGUGGCGGCCUacGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 14987 0.71 0.16275
Target:  5'- cAGCUUGCGCUGuuGUCGG-UGgCGGUa -3'
miRNA:   3'- -UCGAGCGCGGUggCGGCCuACgGCCG- -5'
30906 5' -63.6 NC_006552.1 + 15492 0.66 0.352063
Target:  5'- cGGCUUGCGCCugcugcgcgucaGCCuugccuugggccuGCUGGAUGUCGuccuGCa -3'
miRNA:   3'- -UCGAGCGCGG------------UGG-------------CGGCCUACGGC----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.