miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30908 3' -60.7 NC_006552.1 + 43889 0.77 0.082014
Target:  5'- gUGGACCAGGCGGUGCuugcgaacucccGCGGCu-GCUu -3'
miRNA:   3'- -ACCUGGUCCGCCGCGu-----------CGUCGuuCGG- -5'
30908 3' -60.7 NC_006552.1 + 64733 0.77 0.084782
Target:  5'- -cGACguGGCGGCGCuGCAGguGGCg -3'
miRNA:   3'- acCUGguCCGCCGCGuCGUCguUCGg -5'
30908 3' -60.7 NC_006552.1 + 11042 0.76 0.097299
Target:  5'- aUGGcaACCAGGCGGcCGCcgGGCuucAGCAGGCUg -3'
miRNA:   3'- -ACC--UGGUCCGCC-GCG--UCG---UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 27363 0.75 0.117779
Target:  5'- cGGGCCAGGa-GCcgGCAGacCAGCAGGCCg -3'
miRNA:   3'- aCCUGGUCCgcCG--CGUC--GUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 33535 0.74 0.131222
Target:  5'- cUGGuGCgCAGGC-GCGCAGCggccgacagcAGCAGGCCa -3'
miRNA:   3'- -ACC-UG-GUCCGcCGCGUCG----------UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 28608 0.74 0.14184
Target:  5'- aGGAUC-GGCGGCGguucgaugccuucCAGCGGCAGGUa -3'
miRNA:   3'- aCCUGGuCCGCCGC-------------GUCGUCGUUCGg -5'
30908 3' -60.7 NC_006552.1 + 59287 0.73 0.150013
Target:  5'- -cGACC--GCGGCGCuGaCGGCAAGCCg -3'
miRNA:   3'- acCUGGucCGCCGCGuC-GUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 39273 0.73 0.162432
Target:  5'- aGGugacaGCCAGcGCugccGGCGCaggaAGCGGCAGGCCu -3'
miRNA:   3'- aCC-----UGGUC-CG----CCGCG----UCGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 56852 0.72 0.17577
Target:  5'- gGGAUUcGGCaGCGCcGCGGCGAGCg -3'
miRNA:   3'- aCCUGGuCCGcCGCGuCGUCGUUCGg -5'
30908 3' -60.7 NC_006552.1 + 40359 0.71 0.227461
Target:  5'- gUGGaACCAGaUGGCGCAGCcaucGCugcGGCCg -3'
miRNA:   3'- -ACC-UGGUCcGCCGCGUCGu---CGu--UCGG- -5'
30908 3' -60.7 NC_006552.1 + 63680 0.71 0.227461
Target:  5'- aGGACCAGGCGcCGac---GCAAGCCg -3'
miRNA:   3'- aCCUGGUCCGCcGCgucguCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 61966 0.71 0.233284
Target:  5'- -uGACCAGauccaaugcgccGCuGUGCAGCAGCGAGgCCg -3'
miRNA:   3'- acCUGGUC------------CGcCGCGUCGUCGUUC-GG- -5'
30908 3' -60.7 NC_006552.1 + 25293 0.7 0.244693
Target:  5'- aUGGACCGGGUagcggugucggucGGCGUccaagcugGGCGGguAGCg -3'
miRNA:   3'- -ACCUGGUCCG-------------CCGCG--------UCGUCguUCGg -5'
30908 3' -60.7 NC_006552.1 + 15019 0.7 0.245306
Target:  5'- cGGcGCCAGuggcuucagcacGCGGgGCugcGCAGCAGGCUg -3'
miRNA:   3'- aCC-UGGUC------------CGCCgCGu--CGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 30653 0.7 0.245306
Target:  5'- uUGGAagucggccacCCAGGCGGUGUAGaugucgucgAGCGAuGCCg -3'
miRNA:   3'- -ACCU----------GGUCCGCCGCGUCg--------UCGUU-CGG- -5'
30908 3' -60.7 NC_006552.1 + 41403 0.7 0.251508
Target:  5'- gGGucaGCCAGGCaGCGCGcCAGUucGGCCg -3'
miRNA:   3'- aCC---UGGUCCGcCGCGUcGUCGu-UCGG- -5'
30908 3' -60.7 NC_006552.1 + 8137 0.7 0.257838
Target:  5'- cUGcGCCAGGUGGuCGC-GCAGUAucgcGGCCc -3'
miRNA:   3'- -ACcUGGUCCGCC-GCGuCGUCGU----UCGG- -5'
30908 3' -60.7 NC_006552.1 + 8419 0.7 0.263647
Target:  5'- gGGGCuCAGGCcgcgccaGGCGC-GCAGCAGuCCc -3'
miRNA:   3'- aCCUG-GUCCG-------CCGCGuCGUCGUUcGG- -5'
30908 3' -60.7 NC_006552.1 + 53993 0.7 0.264298
Target:  5'- -aGGCCAGGC-GCGUggcccuggcccuGGCcGCGAGCCg -3'
miRNA:   3'- acCUGGUCCGcCGCG------------UCGuCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 61126 0.69 0.284466
Target:  5'- aGGACaucagcgaagagCAGGCGuuggcagagggaGUGC-GCGGCGAGCCa -3'
miRNA:   3'- aCCUG------------GUCCGC------------CGCGuCGUCGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.