miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30908 3' -60.7 NC_006552.1 + 4731 0.67 0.394459
Target:  5'- -aGGCCgAGGCGGCGUcuccugcaccAGCuucGGCGGuGCCg -3'
miRNA:   3'- acCUGG-UCCGCCGCG----------UCG---UCGUU-CGG- -5'
30908 3' -60.7 NC_006552.1 + 6770 0.68 0.328403
Target:  5'- -cGAUCAGGUcuucGGCGUcuucGGCgaacGGCAAGCCa -3'
miRNA:   3'- acCUGGUCCG----CCGCG----UCG----UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 7202 0.67 0.368703
Target:  5'- cGucCCGucccCGGCGC-GCAGCGAGCCg -3'
miRNA:   3'- aCcuGGUcc--GCCGCGuCGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 8137 0.7 0.257838
Target:  5'- cUGcGCCAGGUGGuCGC-GCAGUAucgcGGCCc -3'
miRNA:   3'- -ACcUGGUCCGCC-GCGuCGUCGU----UCGG- -5'
30908 3' -60.7 NC_006552.1 + 8419 0.7 0.263647
Target:  5'- gGGGCuCAGGCcgcgccaGGCGC-GCAGCAGuCCc -3'
miRNA:   3'- aCCUG-GUCCG-------CCGCGuCGUCGUUcGG- -5'
30908 3' -60.7 NC_006552.1 + 10442 0.67 0.394459
Target:  5'- uUGGuuACCAGuagcgagaCGGCGCA--GGCGAGCCa -3'
miRNA:   3'- -ACC--UGGUCc-------GCCGCGUcgUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 11042 0.76 0.097299
Target:  5'- aUGGcaACCAGGCGGcCGCcgGGCuucAGCAGGCUg -3'
miRNA:   3'- -ACC--UGGUCCGCC-GCG--UCG---UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 12959 0.69 0.291454
Target:  5'- uUGG-CCuGGCGGUGCguucgaGGcCAGC-AGCCg -3'
miRNA:   3'- -ACCuGGuCCGCCGCG------UC-GUCGuUCGG- -5'
30908 3' -60.7 NC_006552.1 + 13720 0.68 0.363691
Target:  5'- uUGGccuucuGCCAGGCcacgaaugugucgauGGCGCGGUcGUAGGCg -3'
miRNA:   3'- -ACC------UGGUCCG---------------CCGCGUCGuCGUUCGg -5'
30908 3' -60.7 NC_006552.1 + 15019 0.7 0.245306
Target:  5'- cGGcGCCAGuggcuucagcacGCGGgGCugcGCAGCAGGCUg -3'
miRNA:   3'- aCC-UGGUC------------CGCCgCGu--CGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 16028 0.67 0.394459
Target:  5'- -uGuCCAcGGCcuGCGCAGCAGCAccagaaaguGGCCc -3'
miRNA:   3'- acCuGGU-CCGc-CGCGUCGUCGU---------UCGG- -5'
30908 3' -60.7 NC_006552.1 + 20440 0.69 0.31322
Target:  5'- aGGGCCAGGCccugcugcacGGCGaAGC-GCAGGUUc -3'
miRNA:   3'- aCCUGGUCCG----------CCGCgUCGuCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 22522 0.66 0.446478
Target:  5'- gUGGGCCGccuugugaucGGCGaGCGCgguaugcccccAGCGGCGgcgcaguccauccuGGCCc -3'
miRNA:   3'- -ACCUGGU----------CCGC-CGCG-----------UCGUCGU--------------UCGG- -5'
30908 3' -60.7 NC_006552.1 + 25293 0.7 0.244693
Target:  5'- aUGGACCGGGUagcggugucggucGGCGUccaagcugGGCGGguAGCg -3'
miRNA:   3'- -ACCUGGUCCG-------------CCGCG--------UCGUCguUCGg -5'
30908 3' -60.7 NC_006552.1 + 27363 0.75 0.117779
Target:  5'- cGGGCCAGGa-GCcgGCAGacCAGCAGGCCg -3'
miRNA:   3'- aCCUGGUCCgcCG--CGUC--GUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 27610 0.66 0.430559
Target:  5'- aGGAugcCCAGGUaGGUGCugauGCGcGCcGAGCCg -3'
miRNA:   3'- aCCU---GGUCCG-CCGCGu---CGU-CG-UUCGG- -5'
30908 3' -60.7 NC_006552.1 + 28608 0.74 0.14184
Target:  5'- aGGAUC-GGCGGCGguucgaugccuucCAGCGGCAGGUa -3'
miRNA:   3'- aCCUGGuCCGCCGC-------------GUCGUCGUUCGg -5'
30908 3' -60.7 NC_006552.1 + 28922 0.66 0.449321
Target:  5'- cUGGAauCCGGcCGGCuCGGCaaGGUGAGCCa -3'
miRNA:   3'- -ACCU--GGUCcGCCGcGUCG--UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 30077 0.67 0.385745
Target:  5'- aUGGACgAuGCGG-GUAGCAgGCuGGCCa -3'
miRNA:   3'- -ACCUGgUcCGCCgCGUCGU-CGuUCGG- -5'
30908 3' -60.7 NC_006552.1 + 30354 0.66 0.458869
Target:  5'- aGcGCCAGGuCGGCGUuGUAGUu-GCCc -3'
miRNA:   3'- aCcUGGUCC-GCCGCGuCGUCGuuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.